Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3048 ATGATGCCACTGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCTAGCTTCATGTTTGTCTGGGCGATCATAAGGCAATATTGTCCCTACGAGGTTAGACGTTTTTTTGAGAAGTACACACATACGATCATGGGCTACTTCTACCCTTACATCAGAATATCTTTCCATGAGTTCTTGGGAGACAGGCTCAAGCGTAGTGAGGCCTATGCTGCTGTGGAGGCATACCTTAGTGCCAACACATCAAAGAGTGCAAAGAGGCTCAAAGCTGAGATGGGAAAGGATAGTAGCAACTTGGTGTTGACTATGGATGAGTATGAGAGAGTAACTGATGACTATGAGGGTGTTAAAGTTTGGTGGGTGTCTAGCAAGGTTATGTCACCAACAAGGTCTCCAATGTCTTATTATCAAGAACAAGAGAAAAGGTTCTATAAGCTCACTTTTCACAACAAGTATAGAGAGGTAATAACTGGGTCATATTTGGAGCATGTGATGAGGGAAGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTATACACTAACAGCCCTGGCTACAAGTGGCCAAGTTACAAGCAAACCATGTGGAGCCACATTGTGTTTGAGCACCCTGCCACTTTTGACACAATGGCCTTGGAGCCTGAGAAGAAGAAGGAGATCATCGAGGATTTGGTTACTTTCAGCAAGAGCAAGGATTTCTATGCTAGGATTGGCAAGGCATGGAAGAGGGGTTATCTTCTTTATGGCCCTCCAGGCACTGGTAAGTCCACAATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCTGTGAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAGACAACTAGTAAGTCTATAATTGTTATTGAGGACATCGATTGCTCACTTGATCTTACAGGGCAGAGGAAGAAGAAATCAGATAAGTTATCAGATGATGAGAATGACAAGGATGTCGTTGGAAGGAAAGACAGCAAAGAAGAAGGAAATAGTGGCAGCAAAGTCACACTCTCAGGGCTATTGAATTTCATTGATGGAATATGGTCAGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACAAACTATGTGGAGAAGCTTGATCCTGCACTCATTAGAAGGGGAAGAATGGACAAGCATGTTGAGCTTTCCTATTGTAGTTTTGATGGGTTTAAAGTGCTTGCTAATAACTACTTGAAGCTTGAGACTCATCCATTGTTTGACACAATTAAGAGGCTAATGGGGGGGATCAAGATCACTCCAGCTGATGTTGCTGAGAACCTTATGCCCAAGTCTCCACTGGATGATGCTCATAAGTGTCTTTCAAACTTGATTGAAGCACTTGAGGAAGCAGCAGCTGCTACAAAAGCTGAGGAACTGAGACAGAGTAGTCCCATTAAGGAGAATGATGAGGATGTGCAATATAAGAGTTCCATCAAGGAAAATGGTGAACTTTTATGTAATAAAGAAACTGAACAAGCAATGAACCAATGCCAGCGATAG 1539 0.4334 MMPLKMSEMWTTMGSTLASFMFVWAIIRQYCPYEVRRFFEKYTHTIMGYFYPYIRISFHEFLGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDDYEGVKVWWVSSKVMSPTRSPMSYYQEQEKRFYKLTFHNKYREVITGSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFDTMALEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKSDKLSDDENDKDVVGRKDSKEEGNSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHVELSYCSFDGFKVLANNYLKLETHPLFDTIKRLMGGIKITPADVAENLMPKSPLDDAHKCLSNLIEALEEAAAATKAEELRQSSPIKENDEDVQYKSSIKENGELLCNKETEQAMNQCQR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3048 512 ProSitePatterns AAA-protein family signature. 367 386 IPR003960 GO:0005524|GO:0016887
Apr9g3048 512 MobiDBLite consensus disorder prediction 318 342 - -
Apr9g3048 512 CDD AAA 245 397 - -
Apr9g3048 512 Gene3D - 394 451 - -
Apr9g3048 512 SMART AAA_5 244 399 IPR003593 -
Apr9g3048 512 Coils Coil 450 470 - -
Apr9g3048 512 PANTHER BCS1 AAA-TYPE ATPASE 7 495 - -
Apr9g3048 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 444 IPR027417 -
Apr9g3048 512 Coils Coil 503 512 - -
Apr9g3048 512 MobiDBLite consensus disorder prediction 318 344 - -
Apr9g3048 512 PANTHER ATP BINDING PROTEIN 7 495 - -
Apr9g3048 512 Pfam ATPase family associated with various cellular activities (AAA) 249 396 IPR003959 GO:0005524|GO:0016887
Apr9g3048 512 Pfam Domain associated at C-terminal with AAA 32 124 IPR025753 -
Apr9g3048 512 Gene3D - 200 393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3048 Apr-Chr9 37279425 37280963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3048 209 485 Miscellaneous Gene Families AT3G47060 27.119 3.23e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3048 - - gmx:100798176 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3048 9 37279425 37280963 Apr9g3048 9 37279425 37280963 ECH