Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3006 ATGTTTGGTTCGGTTTGGTTTGAAAATAGAAGCTGTGAGGGAATGGAACAAGGATGGGTTTCATTGGTAAGCAAGTGCAGCACCCTGAAACTCACGAAGCAAATCCACGCCCATATCTGCAAAAGCGGTCTTCAAACTGACCCTTTCGTCTTTGGGAAGCTTCTTCTCCACTGTGCCATCTCTGTCTCCGATGCTCTGCACTATGCTCTCCGTCTCTTCCACCACTTCCCCAACCCCGACACCTTCATGTACAACACCCTCATTCGCGCACTCTCTCTCTCCCAAACCCCTCTCCATTCCCTTCACCCTTTCATCCAAATGCTTCGCAATCCTACCCTCTTCCCTGACAGCTTCTCCTTCGCCTTCGCCCTCAAAGGCGTCGCCAACTCTCGTCACTTGAGACCCGGGATTCAGTTGCATTCTCAAGCTCTCTGTCATGGCTTTGATACCCATATTTTTGTTGGGACAACTTTGATCAGCATGTATGCTGAATGTGGGGACTATGCGTCTGCACAACAGGTGTTTGAGGAAATGTATGATCCAAATGTTGTTGCGTGGAATGCTGTTGTTACCGCCGCTTTTAGGTGTGGTGACGTGGGAGGTTCGTGGGACGTGTTTAGACGGATGCCGGTTCGGAATTTGACCTCTTGGAATGTGATGCTTGCTGGTTATGCTAAAGCAAGTGAGCTTGGGTTGGCAAGAAGAGTTTTTTCTGATATGCCTCTGAGAGATGGTGTTTCTTGGAGCACTATTACTGTTGGGTTTGCTCATAATGGCTTTTTTGACGAGGCTTTTGGGTTTTTCAGGGAATTACTGAGAGAGGGAATCCGGCCGAATGAGGTGAGCCTAACTGGAGTGTTGTCTGCTTGTGCACAAGCTGGGGCGTTTGAGTTTGGGAAGATTTTGCACGGGTTTGTGGAGAAAGCTGGGTTTCTTTGTATTGGATCTGTGAATAATGCTCTAATCGACACCTACTCCAAGTGTGGAAATTTAGCTATGGCTAGGTTGGTCTTTCAAAATATGCCAGTGGCAAGGAGTATTGTGTCTTGGACATCTATGATAGCAGGTCTTGCGATGCATGGTCATGGAGAGGAGGCAATACAACTTTTTCGTGAGATGGAAGAATCTGGAGTTAGACCAGATGGTATTACTTTTATATCTCTCCTCTATGCTTGTAGCCATAGTGGCTTGGTTAAGGAAGGGTGTGATTTTTTTTCTAAGATGAAGAATTTGTATGGTATTGAACCTGCCATTGAGCATTATGGTTGCATGGTTGATCTGTATGGTCGGGCTGCTAAGTTACAGAAGGCCTATGAATTTATTTGTGAAATGCCAATCTCACCTAATGCAATCATTTGGAGGACTCTCCTTGGGGCTTGTAGCATTCATGGCAATATCGAATTGGCAGAGCTTGTGAGAGCAAGGGTTGCTGAAATGGATCCAAACAACTCTGGTGACCATGTACTACTCTCAAATGTTTATGCCATTGCAGGGAAATGGAAGGATGTTGCCAGCATAAGAAGAACAATGACTGAACAGAGTATGAAAAAAACTCCTGGTTGGAGCATGATTGAAATTGATAAGGTCATTTATGGTTTTGTGGCTGGTGAAAAGCCTAACAAGGTTACAGAAGAGGCTCATGAAAAACTGAGGGAAATAATGTTGAGACTCAGAGCAGAAGCAGGTTATGCCCCACAGCTAAGGAATGTTTTGCATGATATTGAAGAGGAAGATAAAGAAGATTCAGTTTCTAAGCACAGTGAGAAGCTTGCGGCGGCTTTTGGAATAGCCAAACTTCCTAAGGGAAAAACTTTAAGAATTGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAAGATGGATTCTGTTCTTGTAAAGATTACTGGTGA 1965 0.4468 MFGSVWFENRSCEGMEQGWVSLVSKCSTLKLTKQIHAHICKSGLQTDPFVFGKLLLHCAISVSDALHYALRLFHHFPNPDTFMYNTLIRALSLSQTPLHSLHPFIQMLRNPTLFPDSFSFAFALKGVANSRHLRPGIQLHSQALCHGFDTHIFVGTTLISMYAECGDYASAQQVFEEMYDPNVVAWNAVVTAAFRCGDVGGSWDVFRRMPVRNLTSWNVMLAGYAKASELGLARRVFSDMPLRDGVSWSTITVGFAHNGFFDEAFGFFRELLREGIRPNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLCIGSVNNALIDTYSKCGNLAMARLVFQNMPVARSIVSWTSMIAGLAMHGHGEEAIQLFREMEESGVRPDGITFISLLYACSHSGLVKEGCDFFSKMKNLYGIEPAIEHYGCMVDLYGRAAKLQKAYEFICEMPISPNAIIWRTLLGACSIHGNIELAELVRARVAEMDPNNSGDHVLLSNVYAIAGKWKDVASIRRTMTEQSMKKTPGWSMIEIDKVIYGFVAGEKPNKVTEEAHEKLREIMLRLRAEAGYAPQLRNVLHDIEEEDKEDSVSKHSEKLAAAFGIAKLPKGKTLRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCKDYW* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3006 654 Pfam DYW family of nucleic acid deaminases 562 654 IPR032867 GO:0008270
Apr9g3006 654 Coils Coil 540 560 - -
Apr9g3006 654 Gene3D Tetratricopeptide repeat domain 19 109 IPR011990 GO:0005515
Apr9g3006 654 Gene3D Tetratricopeptide repeat domain 316 626 IPR011990 GO:0005515
Apr9g3006 654 Gene3D Tetratricopeptide repeat domain 213 311 IPR011990 GO:0005515
Apr9g3006 654 Gene3D Tetratricopeptide repeat domain 116 212 IPR011990 GO:0005515
Apr9g3006 654 Pfam PPR repeat family 346 393 IPR002885 -
Apr9g3006 654 PANTHER OS01G0913400 PROTEIN-RELATED 22 594 - -
Apr9g3006 654 PANTHER - 22 594 - -
Apr9g3006 654 Pfam E motif 463 525 IPR046848 -
Apr9g3006 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Apr9g3006 654 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Apr9g3006 654 TIGRFAM PPR: pentatricopeptide repeat domain 216 249 IPR002885 -
Apr9g3006 654 TIGRFAM PPR: pentatricopeptide repeat domain 348 381 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 420 444 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 216 241 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 184 213 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 246 276 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 156 178 IPR002885 -
Apr9g3006 654 Pfam PPR repeat 319 341 IPR002885 -
Apr9g3006 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Apr9g3006 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3006 Apr-Chr9 36915790 36918826 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3006 29 654 Glycoside Hydrolase AT3G49170 33.086 2.63e-118 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3006 - - ccaj:109807035 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3006 9 36915790 36918826 Apr9g3006 9 36915790 36918826 ECH