Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3000 ATGGCGGCGGCGGCGGCACCGGCAGCTACCTTCACAATTGGAATCACTGCTTCCATCGGCCAAAGAGGGGGCTCACTTTATCAATCAAAGCCTTTTGGGTTGAAGTTCAACTCACAGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCTGTGAGATGTGATTCGGAATTTTCGTTCTTTGGCAAGGAAACCGGTGCTGCTTTGCGGGCATCTTTTGCCTCCAGAGCTCGAAAGGAAAACCAGAACTTCCAGCACCACTTGCAGCCTCAGGCTTCCTTTAAAGTGGCAGTTCTTGGTGCTGCTGGAGGGATTGGTCAGCCGCTAGCGCTTCTTATCAAGATGTCCCCATTAGTTTCCGACCTGCATCTCTATGATATTGCGAATGTTAAGGGAGTTGCTGCTGATCTCAGTCATTGCAACACACCCTCACTAGTCAAGGATTTCACAGGAGCTTCTGAGTTAGCAAGTTGTTTGAAAGGGGTGGATGTTGTTGTTATACCTGCTGGTGTTCCAAGGAAGCCTGGCATGACTCGTGATGACCTTTTCAACATCAATGCTGGCATAGTCAGGGACTTGGTTTCGGCTGTTGCGGACAATTGTCCTGATGCTTTTATTCACATTATCAGTAACCCTGTAAACTCTACTGTGCCTATTGCAGCAGAGGTTCTGAAACAAAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGCGTTACTACGCTGGATGTTGTGAGGGCAAACACGTTTGTTGCTCAGAGGAAGAATCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCTGGGATTACCATTCTTCCTCTGTTGTCAAAGACGAGGCCCTCAGTAAGTTTCACTGATGAAGAAGTTGAGGAGCTAACTGTAAGGATTCAAAACGCAGGAACTGAAGTTGTTGAAGCAAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCATATGCAGCAGCTAGATTTGTTGAATCCTCTCTTCGTGCGCTTGATGGAGATGGGGATGTGTACGAGTGCTCATTTGTGCAATCAGATCTTACTGACCTTCCGTTTTTCGCTTCGAGGGTGAAGCTTGGTAAGAAAGGAGTTGAGGCTTTAATTCCATCTGATCTCCAAGGGTTGACTGACTATGAACAGAAGGCTTTGGAAGCACTTAAGCCAGAACTTAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 1245 0.4723 MAAAAAPAATFTIGITASIGQRGGSLYQSKPFGLKFNSQNHLKSFCGLKAMSSVRCDSEFSFFGKETGAALRASFASRARKENQNFQHHLQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADLSHCNTPSLVKDFTGASELASCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGKKGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQAVAA* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3000 414 Pfam lactate/malate dehydrogenase, NAD binding domain 97 239 IPR001236 GO:0016491
Apr9g3000 414 Gene3D - 94 240 - -
Apr9g3000 414 SUPERFAMILY LDH C-terminal domain-like 240 407 IPR015955 GO:0003824|GO:0016616
Apr9g3000 414 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 28 414 - -
Apr9g3000 414 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 97 408 IPR010097 GO:0006099|GO:0030060
Apr9g3000 414 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 240 IPR036291 -
Apr9g3000 414 ProSitePatterns Malate dehydrogenase active site signature. 240 252 IPR001252 GO:0006108|GO:0016615
Apr9g3000 414 CDD MDH_glyoxysomal_mitochondrial 96 407 IPR010097 GO:0006099|GO:0030060
Apr9g3000 414 PANTHER MALATE AND LACTATE DEHYDROGENASE 28 414 - -
Apr9g3000 414 Gene3D - 241 412 IPR015955 GO:0003824|GO:0016616
Apr9g3000 414 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 241 406 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3000 Apr-Chr9 36846023 36848158 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3000 K00026 - gmx:100783173 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3000 9 36846023 36848158 Apr9g3000 9 36846023 36848158 ECH