Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2987 ATGGATAACCCAAGTTCCACCGTTTGGAACCACGTGATCAGAGGCTATGCACGGACCCAAATGCCTTGGAAATCGGTGGAATGTTACAACCTGATGGTGTTCGCTGAGGCTGTGCCTGATGGGTTCACTTACTCGTCTCTTTTGAGTGCGTGTGCGCGAGGTGGGTTGGTAAGAGAAGGGGAACAGGTCCATGGCACAGTTTTGGTAAAAGGGTATTGCTCCAATGTCTTTGTAGACACTAATTTGATCAATTTCTATGCCATGCGCGGTAGGGTTGAGCAAGCACGTCATGTGTTTGATGATATGAAGCAGAGAAGTGTTGTAAGCTGGAATTCTATACTTGCTGGGTATGTTAGGTGTGGTGATTTTGATGGGGCAAGAAGGGTTTTTGACAAGATGCCACATAGGAATGTTGTCTCTTGGACCACCATGGTTGCTGGGTGTGCTCAGAATGGCAAGTCCAAACAAGCTTTGTTGTTGTTTGGTGAGATGAGGAGAGCGCATGTGGAATTGGATCAGGTGGCACTGGTGGCAGCTTTGTCAGCATGTGCTGAATTGGGGGATCTGAAATTGGGAAGATGGATCCATTGGTACGTTCAGCAGTGGTTTGTTGCAAGGAACCAGCAGCATCCCTCTGTGCACTTGAACAATGCGCTCATACACATGTATGGTAGTTGTGGACTCATTGATGCAGCTTATCAAGTGTTTGCCAAGATGCCTCAGAAAAGCACTGTGTCTTGGAACAGCATCATCATGGCTTTTGCAAAACAAGGCCTTGGAAAGGAAGCCTTTGATATGTTTAGGACTATGCTTTGTGATGGTGTGGGAGTAAATGGAGTAAGACCTGATGAAGGAACCTTCATTGGAGTTCTTTGTGCTTGCAGCCATGCAGGGTTTGTCTACGAGGGACGCCAAATTTTTGCATCCATGAAGCATACTTGGGGAATCAGCCCGAGGATTGAACACTACGGATGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGACGAAGCATGTGGACTTATTGAAACTATGCCCTTAAAGCCTAATGATGCACTATGGGGTGCCCTCCTTGGCGGTTGTCAAATACACAAGAATTCAGAACTAGCATCACGAGTGGAAAACAAGTTAGTTGCTGAGCTCAACCCTGATCAAGCTGCAGGCTATCTTGTGCTCTTGTCAAACATATATGCTTTTGCCCAAAGGTGGCAGGATGTCATTACAGTAAGGCAGAAAATGATTGAGATGAGTGTGAAGAAGCCTCCAGGCGAAAGTTGGATCCAAATTGATGGAGTTGTCCATAATTTTGTGGCAGGTGATATGACTCATAAGCATTCGTCTTTTATGTATGAAATCTTTCGTGATATCATCAAGCATGCCAATCTGGAAGTCTCTGAACCAGACATAACAAGTGTTTTCTTGGATGTTGAGGTGTAG 1440 0.4562 MDNPSSTVWNHVIRGYARTQMPWKSVECYNLMVFAEAVPDGFTYSSLLSACARGGLVREGEQVHGTVLVKGYCSNVFVDTNLINFYAMRGRVEQARHVFDDMKQRSVVSWNSILAGYVRCGDFDGARRVFDKMPHRNVVSWTTMVAGCAQNGKSKQALLLFGEMRRAHVELDQVALVAALSACAELGDLKLGRWIHWYVQQWFVARNQQHPSVHLNNALIHMYGSCGLIDAAYQVFAKMPQKSTVSWNSIIMAFAKQGLGKEAFDMFRTMLCDGVGVNGVRPDEGTFIGVLCACSHAGFVYEGRQIFASMKHTWGISPRIEHYGCMVDLLSRAGFLDEACGLIETMPLKPNDALWGALLGGCQIHKNSELASRVENKLVAELNPDQAAGYLVLLSNIYAFAQRWQDVITVRQKMIEMSVKKPPGESWIQIDGVVHNFVAGDMTHKHSSFMYEIFRDIIKHANLEVSEPDITSVFLDVEV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2987 479 Pfam PPR repeat family 136 182 IPR002885 -
Apr9g2987 479 Pfam PPR repeat family 242 294 IPR002885 -
Apr9g2987 479 Pfam PPR repeat family 4 53 IPR002885 -
Apr9g2987 479 Gene3D Tetratricopeptide repeat domain 276 452 IPR011990 GO:0005515
Apr9g2987 479 Gene3D Tetratricopeptide repeat domain 2 101 IPR011990 GO:0005515
Apr9g2987 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Apr9g2987 479 Pfam PPR repeat 80 106 IPR002885 -
Apr9g2987 479 Pfam PPR repeat 322 346 IPR002885 -
Apr9g2987 479 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 455 - -
Apr9g2987 479 TIGRFAM PPR: pentatricopeptide repeat domain 81 108 IPR002885 -
Apr9g2987 479 TIGRFAM PPR: pentatricopeptide repeat domain 108 138 IPR002885 -
Apr9g2987 479 TIGRFAM PPR: pentatricopeptide repeat domain 139 172 IPR002885 -
Apr9g2987 479 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Apr9g2987 479 Pfam E motif 365 429 IPR046848 -
Apr9g2987 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Apr9g2987 479 PANTHER OS09G0411600 PROTEIN 5 455 - -
Apr9g2987 479 Gene3D Tetratricopeptide repeat domain 208 275 IPR011990 GO:0005515
Apr9g2987 479 Gene3D Tetratricopeptide repeat domain 102 207 IPR011990 GO:0005515
Apr9g2987 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2987 Apr-Chr9 36751269 36752708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2987 1 458 Glycoside Hydrolase AT3G49170 32.391 5.16e-77 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2987 - - aprc:113874808 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2987 9 36751269 36752708 Apr9g2987 9 36751269 36752708 ECH