Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2950 ATGGCAGAATCACGAACTCGAAGACCCCGTTCAAGCATTCTCGATTCTTTGGGGGAAGAAATCGTCAGAATCATCGCACCCGTTTCGATATGCATGTTCTTGGTGGTAATCTTGGTAACAATCCTAAACAACAACTCTTCCTTCGAAGCAACAGTGAGCAGCATAGCCACCATAGCATACACCGAGACAACCTCGGACTCAACCTGGGACAAATTCGTAGGTTCCCTTTTGAACTCCTTGGCCTTCGTAGTGTTTGTCACCTTCGCAACCTTCATCTTGGTCGTCTTCTTCTACTTCGGATGCACCAGGTTTTTGAGATTCTACATGGGTTTATCTGCTTTCGTTGTGTTGGGATTCCTCGGCGGTGAAGTATCCTTGTCCTTGATAGAACATTATAGTACTCCCGTTGATTGCATAACGTTTTCCCTTGTGTTGTTTAATTTTGCTGTTGTGGGAATTTTGGCCGTGTTTATGTCAAAAATGGCGATTTTTGTTACGCAAGGGTATTTGGTTATTATTGGAATGTTGGTTGCGTATTGTTTTACTATGTTACCTGAGTGGACCACGTGGGCCATGCTTATTTCTATGGCATTGTATGACCTTGCTGCTGTTTTGTTGCCTGTTGGGCCTCTAAGGCTTTTGGTAGAGCTTGCAATTTCAAGGGATGAAGAAATTCCTGCTTTGGTTTATGAGGCTAGGCCGGTGAATCATGACAATTTGGAACCAAGGGATAGGGATACTGCGGCTCAGAGGAGGGTGTGGAGAGACCCAGCAGAAAGGAGGGTTCAGCCTACAGTTATCCAACCTGATCCCCGTTTGTTGAGAAACTTGGTAATGGCAGAAGACGTACTGCTACGGGTTCCAGAAGAACCTTATTCGGAGCTTTATAGACCCTTGATTGATCATGGAATGAATGTCCAGCTGGGAAGGGCAGAGGATAGTACGTCAAATGAAAGTTTGATGCTTGAAGGAATTGGATTGGGTTCAACTGGTGCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCAGCGATGTATGATTTTATGACGGTGTATGCATGTTATCTGGCTATCATTGCCGGTCTGGGCGTAACTTTGATGCTTTTGGCTTTTTATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAATAGCACTGGGTGTATTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTTGTACAATGTTCCTTGAATCTCCTGATGTTCTAG 1257 0.4423 MAESRTRRPRSSILDSLGEEIVRIIAPVSICMFLVVILVTILNNNSSFEATVSSIATIAYTETTSDSTWDKFVGSLLNSLAFVVFVTFATFILVVFFYFGCTRFLRFYMGLSAFVVLGFLGGEVSLSLIEHYSTPVDCITFSLVLFNFAVVGILAVFMSKMAIFVTQGYLVIIGMLVAYCFTMLPEWTTWAMLISMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHDNLEPRDRDTAAQRRVWRDPAERRVQPTVIQPDPRLLRNLVMAEDVLLRVPEEPYSELYRPLIDHGMNVQLGRAEDSTSNESLMLEGIGLGSTGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLAFYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLMF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2950 418 Gene3D Presenilin 315 410 IPR042524 -
Apr9g2950 418 PANTHER PRESENILIN HOMOLOG 10 418 - -
Apr9g2950 418 Pfam Presenilin 324 408 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr9g2950 418 Pfam Presenilin 18 249 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr9g2950 418 SMART psh_8 73 404 IPR006639 GO:0004190|GO:0016021
Apr9g2950 418 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr9g2950 418 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr9g2950 418 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016021|GO:0016485
Apr9g2950 418 PANTHER PRESENILIN 10 418 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2950 Apr-Chr9 36393301 36394605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2950 4 418 Miscellaneous Gene Families AT2G29900 62.500 9.74e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2950 K04505 - gmx:100780823 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2950 9 36393301 36394605 Apr9g2950 9 36393301 36394605 ECH