Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2946 ATGGCCATACAGGAAGCAAACCCTGAGACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAGTATTATCACATTCTGCACCAATCCCCAAACTTAGTGCACAGATTTTATCAGGATTCAAGTATCCTAAGCAGATCAGACAGCAATGGTGTGATGACAACTGTGACAACTACAAAAGACATCAATGAAAAGATTATCTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCTGATGCTCAGGAATCATACGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTAAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTCAGGTACATTGAGGAGAATGACACACTGCAGTTAAATTCTACCTCAATAAATGTCATAAATGAAAATGCTGAGGCAGTACACATGCCAGAATCAGAGGATGTGCATGCTCCTGAACATCTTGTGGCAGACACTGCAGCTTCTGTAGAGGGTGAAAACCTTAATAATGGTGCTGAAGTTTATGATCCTCAAGATGAGGAAGAAGGATCAGTTATTGATGAAGAAGTAACTGAACCCCCTACCGATTTAAGTCAAAATGATATTGTTACAATTCATGATTCAACTTCTGCTGTCCAGGACTATGCACCAAGGACATCATATGCATCAATTGTAATGAAAAGTAACACAGCATCCAGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAGTAGGATCTGCTCAATCCACTGAACAATGGTCTACTACTGCCAAATCAACTCCTGTGCCTGAGGCATTAGGGCCTAGCAGTGACAGTGCACCTGGGAGTAGTGATGTTCATGAAGAAGCTGAAGGTCATTCCATATACATAAGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAGGTCTTTCAGAAATTTGGTCCTATTAAGCACGGTGGTATCCAAGTTAGAAGTAGTAAGCATGGTTTTTGTTTTGGCTTTGTTGAATTTGAGGAACTGAGTTCCATGCACAGTGCACTTGAGGCTTCCCCCATCACTGTTGGAGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACACGAGTCAGCGGCAGTGGGAGGGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAGTGAGAGTTTCAGGGGGCGCGGCAAATTCGGTGGCGGAAGAGGTTTTGGCAGAAATGAATTCAGAAATCAAGGGGAATTCTCAGGGAGACCTAGGAGTTCTCAACGCTCAAATCAGAATGGAGGGGGGCGTGGTGGACGTCAAGGTGCCGGGAACCGTAGTTCGACACAGTCAACTGCTGCATGA 1380 0.4362 MAIQEANPETTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSILSRSDSNGVMTTVTTTKDINEKIISLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTLQLNSTSINVINENAEAVHMPESEDVHAPEHLVADTAASVEGENLNNGAEVYDPQDEEEGSVIDEEVTEPPTDLSQNDIVTIHDSTSAVQDYAPRTSYASIVMKSNTASSHVYVPSRAARVGSAQSTEQWSTTAKSTPVPEALGPSSDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFQKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSESFRGRGKFGGGRGFGRNEFRNQGEFSGRPRSSQRSNQNGGGRGGRQGAGNRSSTQSTAA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2946 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Apr9g2946 459 SUPERFAMILY RNA-binding domain, RBD 299 407 IPR035979 GO:0003676
Apr9g2946 459 MobiDBLite consensus disorder prediction 377 459 - -
Apr9g2946 459 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Apr9g2946 459 MobiDBLite consensus disorder prediction 261 292 - -
Apr9g2946 459 SMART rrm1_1 303 374 IPR000504 GO:0003723
Apr9g2946 459 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Apr9g2946 459 MobiDBLite consensus disorder prediction 261 299 - -
Apr9g2946 459 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 451 - -
Apr9g2946 459 CDD RRM_SF 304 361 - -
Apr9g2946 459 MobiDBLite consensus disorder prediction 424 459 - -
Apr9g2946 459 Gene3D - 7 137 - -
Apr9g2946 459 Gene3D - 290 418 IPR012677 -
Apr9g2946 459 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Apr9g2946 459 CDD NTF2 13 135 IPR018222 -
Apr9g2946 459 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 451 IPR039539 -
Apr9g2946 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 378 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2946 Apr-Chr9 36355199 36362719 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2946 K24983 - gmx:100801253 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2946 9 36355199 36362719 Apr9g2946 9 36355199 36362719 ECH