Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2311 ATGAACGCCCTCTCTTCTTCTTCCTCTTCCAACTTCACTTTCTTCACTCAGTCCAAAAACCCTAGCCATCATTTTAAATTCACCCCTAAAGTACCCAATTTACCCCTACACTCTTCTCCTTCCCATCTCACTGCACCTGCTCCATGTTGCTCTCTCGGTGACTCATCAACCACGTTGCTGGAAAAAAATGCCCTTTCCTCCGAACTAAGTTCCCGGAATGCCGTTTTACCAAAAGACTCAAGCTTTGAGGAAGCGCTCGTGGTTCGCAGGCCGATGACAGATTTTTCCGGCGAAGACTCCGACGAGGAGGTGGAAGAAAGGTGTGAGACGGAGAACAATGATCCAAAGGGTTCTTCGATTGTAGCCGGGCTAGCGAAAGTTGCGAAGAAGATGCCGATGTTTGAGCCGAAGAGGGTCGAATCCAAAGAGAGGCCTCTGGCAGTGAATTTGGACTTGGCGATATATAGAGCGAATGTTTTGGCTAGAAAATTTCGCTATGAAGAAGCAGAGGCAATACTTCAGAAGTGTTGGGCTGTTCTTGAAATGAAAGTGGGAAATATCAGGAGAGCAAAACAGTTGTTTGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGATGGGCTGTGCTAGAGTTAAAGCAGGGAAATATTCAAAAGGCAAGGAATCTGCTTGCTAAAGGTCTTCAGTATTGTGGACAGAATGAGTATATATACCAAACACTTGCACTGCTTGAAGCTAAAGCAAATAGATATCAGCAGGCTCGATATTTATTCAGTCAGGCCACTAGGTGTAATCCTAATAGCTGTGCTAGTTGGCTTGCTTGGGCACAAATGGAGATGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCTAACATGGGCAACGTTGACAAAGGAAGAAAACTTCTGAAGATAGGCCATGCTCTAAATCCAAGGGATGCTGTTCTCCTTCAGTCTCTTGCTTTATTAGAATACGAACACTCAACTGCAAACCTTGCCCGAATTTTGTTCAGGAGAGCATCTGAATTGGATCCAAGGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACTTGAATACGGCTAGAGAATTATACCAAAAGACGTTATCCATTGATCTAAATAGTGAAACTGCTGCCAGGTGTCTCCAGGCTTGGGGTGTGCTGGAGCAAAGGGTTGGTAATCTTTCAGCTGCCCGTAGATTATTCAAATCCTCATTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCATTGGAAGAAGATCAAGGAAATTCTGTTCGTGCTGAAGAGATTCGTAACCTCTATTTCCAACAGCGCACAGAAGTTGTAGACGATGCTTCATGGGTTACGGGGTTCTTAGATATTTTAGACCCGGCCATTGACAGTTTAAAGAGGCTCCTCAAGCTGGACCCAAATTCGTACAGCAAGCCATTGGATTCTTTGATAAGTATAGCCAGAACAAATAAAAACAGGGTTGATTTTTCTAGTGACAATAATGGTGATGACGAGGATGGTGAAAGTGGCTTTGATTTGGATGCTTTCATTAAGGAACGGTTATCCATAGATTTGTCCAATCTGGAATTTCAGTTGGACACACCAAAAGTTTCTTCTATGAAGAAAAGTACGTCTACTAGGAGAATATGGCGATCAAATAATAGAATTGCCAAAGTGTAA 1785 0.4353 MNALSSSSSSNFTFFTQSKNPSHHFKFTPKVPNLPLHSSPSHLTAPAPCCSLGDSSTTLLEKNALSSELSSRNAVLPKDSSFEEALVVRRPMTDFSGEDSDEEVEERCETENNDPKGSSIVAGLAKVAKKMPMFEPKRVESKERPLAVNLDLAIYRANVLARKFRYEEAEAILQKCWAVLEMKVGNIRRAKQLFDAATVADKKHVAAWHGWAVLELKQGNIQKARNLLAKGLQYCGQNEYIYQTLALLEAKANRYQQARYLFSQATRCNPNSCASWLAWAQMEMEQENYRAARKLFEKAVQASPKNRFAWHVWGVFEANMGNVDKGRKLLKIGHALNPRDAVLLQSLALLEYEHSTANLARILFRRASELDPRHQPVWFAWGWMEWKEGNLNTARELYQKTLSIDLNSETAARCLQAWGVLEQRVGNLSAARRLFKSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVTGFLDILDPAIDSLKRLLKLDPNSYSKPLDSLISIARTNKNRVDFSSDNNGDDEDGESGFDLDAFIKERLSIDLSNLEFQLDTPKVSSMKKSTSTRRIWRSNNRIAKV* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2311 594 Gene3D Tetratricopeptide repeat domain 344 512 IPR011990 GO:0005515
Apr9g2311 594 Gene3D Tetratricopeptide repeat domain 149 343 IPR011990 GO:0005515
Apr9g2311 594 Pfam Tetratricopeptide repeat 180 231 - -
Apr9g2311 594 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 4 176 IPR044624 GO:0003729|GO:0006397
Apr9g2311 594 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 174 589 IPR044624 GO:0003729|GO:0006397
Apr9g2311 594 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Apr9g2311 594 ProSiteProfiles TPR repeat profile. 273 306 IPR019734 GO:0005515
Apr9g2311 594 SUPERFAMILY TPR-like 167 351 IPR011990 GO:0005515
Apr9g2311 594 SMART tpr_5 375 408 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 273 306 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 205 238 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 171 204 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 341 374 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 412 445 IPR019734 GO:0005515
Apr9g2311 594 SMART tpr_5 239 272 IPR019734 GO:0005515
Apr9g2311 594 Pfam Tetratricopeptide repeat 275 314 - -
Apr9g2311 594 SUPERFAMILY TPR-like 309 510 IPR011990 GO:0005515
Apr9g2311 594 SMART hat_new_1 426 458 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 321 353 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 355 387 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 219 251 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 287 319 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 253 285 IPR003107 GO:0006396
Apr9g2311 594 SMART hat_new_1 185 217 IPR003107 GO:0006396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2311 - - gmx:100819232 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2311 9 30779264 30784025 Apr9g2311 9 30779264 30784025 ECH