Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2305 ATGGCAGAGAAGTACAACCTCAGAAACCCAGCCGTCAAGCGAATTCTCCAAGAGGTTAAGGAAATGCAATCAAACCCTTCCGATGACTTCATGAGCCTCCCCCTCGAGGAGAATATATTTGAATGGCAATTTGCAATTAGGGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCACGGTCGGATCCAATTGCCTTCAGAGTATCCATTCAAACCTCCTTCATTTATGTTGTTGACACCCAATGGTCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAACATTGGCAACCATCGTGGAGTGTAAGGACTGCTCTAGTTGCGCTGGTTGCATTCATGCCCACCAAACCACATGGTGCACTTGGCTCATTAGACTACAAAAAAGAAGAGAGGCATGCCTTGGCCATTAAATCACGGGAAGCATCTCCAAAATTTGGGACCCCTGAACGTCAAAAATTGATTGATGAGATACACGAGTATATGCTAAGCAAGGCACCCCCCGTTCCTCAACATATCCCCTCACAAGCTTCTGAAGAACAATCCAAAACTGAGGAAGCCGAGTCCCAGATTAATCCGCAAAATCCTGAGGTTTTACCTGCAGGTGATGGGATTCCAGATCATGTAGGTGACAGAATAGTTGAAGAACAAGAACTCCCTGTCAATGCTAATCCTAACCCTGCAGGACTTGAAGCTCCAACGGAGAATCCATCCAGCGTTTCAAGCAACCAGTTGCTCCAGAAGTCAGATACAAGGGTTCAAAAACTTGACGATCGATTGTTCACACTGGCAGCTATTGGACTTACTATAGCAATTGTGTTCCTTTTGCTGAAGAAGTTCGTTAAATCTACGGAACATGGTGCTGTTTTCATGGATGGATCTTAG 903 0.4496 MAEKYNLRNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALVAFMPTKPHGALGSLDYKKEERHALAIKSREASPKFGTPERQKLIDEIHEYMLSKAPPVPQHIPSQASEEQSKTEEAESQINPQNPEVLPAGDGIPDHVGDRIVEEQELPVNANPNPAGLEAPTENPSSVSSNQLLQKSDTRVQKLDDRLFTLAAIGLTIAIVFLLLKKFVKSTEHGAVFMDGS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2305 300 Pfam Ubiquitin-conjugating enzyme 14 121 IPR000608 -
Apr9g2305 300 MobiDBLite consensus disorder prediction 173 214 - -
Apr9g2305 300 MobiDBLite consensus disorder prediction 227 253 - -
Apr9g2305 300 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 173 IPR000608 -
Apr9g2305 300 PANTHER BNAC01G21910D PROTEIN 6 300 - -
Apr9g2305 300 SUPERFAMILY UBC-like 11 124 IPR016135 -
Apr9g2305 300 MobiDBLite consensus disorder prediction 235 253 - -
Apr9g2305 300 CDD UBCc 12 120 IPR000608 -
Apr9g2305 300 Gene3D Ubiquitin Conjugating Enzyme 2 196 IPR016135 -
Apr9g2305 300 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 300 - -
Apr9g2305 300 SMART ubc_7 13 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2305 Apr-Chr9 30733773 30736106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2305 3 298 Miscellaneous Gene Families AT3G17000 63.725 6.61e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2305 K10578 - gmx:100804054 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2305 9 30733773 30736106 Apr9g2305 9 30733773 30736106 ECH