Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2289 ATGACCATCGACTTAGATTCCATCGCTCGCAAAGTCGATGTTGACAATCGCATTCCCCTCCGTTATTACTACCGTATTGCCGATAATCTCCTCAAGCAGGCAAGTATCTACAGGGAGGAGAATAATGTTGTTGACTTGTATATCATTCTCCTTAGATATATAAGTTTGCTGTCTGAAACCATACCATATCATCGAGATTATCAAGCTTCACATCCTAGTGAAAAAGCAGCATATAAGAAGAGATCGCTGTATGTATTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAACGCCGGTTGAAAAAATTGAATTACTCGCGTGCAGAGGCTCCATTGCCTGAAGAAAATGACTTCAATAAGGCTTCGCAGAGTTCAGTGAATTCATCTTTGGAATGGCCGGCTGTTAATAAAAGTTATAACTCAAGCATGGATTTTAAACAGCCTGCTGAATTGGGTTCCCACTCTTCATGGAGTTATAATAATAATAATAATATGTTATCATCAAATTTTGTGCCCATTGACAAGCAGTTTCAGAAATTATCTCTTAGTCTACCCCTTCCAAAGAAGGAGACTTTGTCCAGACACTCATTTTTAGGACCAAATGGTCTTCGGGGCCAATGGCTTGGACCTAGAGCAGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCATGCAAACCAAAGACTCAAGCCTGAATCAGGCTGGGCAATATGATCATGTGGTAGTTAAAGATGATGATCAAGGACCAGCTACATCCACAATGGACTCAGTTCTTGCCTTGGATGATGGAAGATGGTTGCATCCTTCTGTTGAGTCCCATCCTCCCGTTTTAACTGAATCAAGGGAGGACCCCTTACAGTTGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTGTATCCGGAATGTGCCTCGATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCTGGACCAGCTAAATCTTCTCAGGATTCTGGACTTGGTCCCTCTACCTATCAACACCTACATATTCCTGTCAAAATGATGGAAGATTTTTTGAGATTAGCTTCAGAAAACACACGGAAGAACTTGGAGACATGTGGTGTTCTTGCAGGGTCCCTGAAAAAAAGGGTTTTCCATATCACAACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTATCACTTTTTCCTTTAGGTTGGATACATACACACCCATCACAGACTTGTTTCATGTCTTCCGTGGATCTGCACACACATTATTCATACCAGATCATGCTACCAGAGGCAATTGCTATTGTCATGGCTCCTACAGATACAACAAGTCCGCATGGCATATTCCATCTGTCTGATCCAAGTGGTGTGTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAGGAGCCTTCGGATGGAAGTCCAATATATGAGCACTGCTCTCATGTTTATATGAATGCTAACTTGAAGTTCGATGTCGTTGACCTTCGAGAGAGATGA 1548 0.418 MTIDLDSIARKVDVDNRIPLRYYYRIADNLLKQASIYREENNVVDLYIILLRYISLLSETIPYHRDYQASHPSEKAAYKKRSLYVLDELESLKPEFKRRLKKLNYSRAEAPLPEENDFNKASQSSVNSSLEWPAVNKSYNSSMDFKQPAELGSHSSWSYNNNNNMLSSNFVPIDKQFQKLSLSLPLPKKETLSRHSFLGPNGLRGQWLGPRAEIKVQYPSSSDLMQTKDSSLNQAGQYDHVVVKDDDQGPATSTMDSVLALDDGRWLHPSVESHPPVLTESREDPLQLLNIKQPLPPPVLAQVYPECASIPPSKVADPRPGPAKSSQDSGLGPSTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTTSPHGIFHLSDPSGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRER* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2289 515 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 513 - -
Apr9g2289 515 Gene3D Cytidine Deaminase, domain 2 323 515 - -
Apr9g2289 515 SUPERFAMILY USP8 N-terminal domain-like 4 117 - -
Apr9g2289 515 SMART pad1_6 338 466 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr9g2289 515 PANTHER AMSH-LIKE PROTEASE 3 513 - -
Apr9g2289 515 ProSiteProfiles MPN domain profile. 339 469 IPR037518 -
Apr9g2289 515 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Apr9g2289 515 SUPERFAMILY JAB1/MPN domain 338 468 - -
Apr9g2289 515 MobiDBLite consensus disorder prediction 311 334 - -
Apr9g2289 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 335 442 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr9g2289 515 CDD MPN_AMSH_like 336 513 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Apr9g2289 515 Gene3D - 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2289 Apr-Chr9 30606808 30615811 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2289 K11866 - gmx:100812784 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2289 9 30606808 30615811 Apr9g2289 9 30606808 30615811 ECH