Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1933 ATGATGTTCTGCTTCAGGCGATTGTTACACAATTCAACTCATGCTCTTTCTGCCCAATTAGCTTTGTCAGAGCAGTTGCTGCATCATTACAACCTCAAATTTCCACTTTTGAATTTGGAATATCATCAGTTTAAAAATTCTTGTTGCTTGGAAGATGCCCATCAGCTTCATTTGCAGGTCTACAAAAGTGGGTTTACATATGATGTTTTCTGGTGTAATACTCTTATTGATATTTATGTCAGAGTTGGCAAATTGGATTCCGCCCAGAAGCTGTTTGATGAAATGCCTCAAAAGAACCTCGTTTCTTGGGCTTGTTTGATTTCAGGGTTTGTACAAAATTGCATGCCTGATGAGGCATGTATTTTATTCAAAGGAATCATTTCAGCTGGTCTCTCACCAAACCACTATGCTATTGGTAGTGCTCTTCGAGCATGCCAAGAGCATGGTCCAACTAAGCTTAAACTTGGGATGGAGATTCATGGCTTACTTTCCAAATCTCCATATGCTTCGGACATGGTGTTGTCTAATGTGCTCATGTCCATGTATTCACATTGCTCAGCTTCCACTGATGATGCTCGTCATGTTTTTGATGAAATAAAAATTAAGAATTCTGCATCCTGGAATTCTATCATTTCGACTTATTGTCGTAGAGGAGATGCAATTTCTTCTTTTAAGCTATTTTCAAGCATGCAAAGGGATTCACAACTTACCTGCAGGCCTAATGAATATACCTTCTGTAGCTTAGTAACGGTTGCATGCTCTCTGGTTGACTATGGACTGACTTTGCTTAAGCAGATGCTGGCTAGGATTGAAAAATCTGGCTTCTTACAAGGTTTGTATGTTGGTAGTGCATTGGTCAGTGGGTTTGCGAAGTTTGGTTTGATAGAACCTGCTAAAACGATTTTTGAGCAGATGTGTGATCGTAATGCAGTGACTATGAATGGGTTAATTGTTGGATTGACAAGGCAGCACCAGGGTGAAGAAGTAGTTAAGATATTCAAGGAAATGAAAGATTTCGTTGAAATAAATGCAGACTCTTATGTGGTTCTTTTAAGTGCTTTTACTGAATTTTCAAATTTAAAGGAAGGGAAGAGAAAGGGTCAAGAGATTCATGCTTATCTGATTCGCAATGCTTTGATTAATGTCTGGATTTCAATAGGAAATGCGCTTGTCAATATGTACGCAAAATGTGATGCCATTGATAATGCTCGGTCAATTTTTAAACTCATGCCCAGTAAAGATATTGTCTCATGGAACTCCATGATCTCTGGCCTGGACCACAATGAGCGGTTTGAGGAAGCAGTTGCCTGTTTCCATACAATGAGAAGAAATGGAATGGTACCCTCAAATTTCTCAGTTATTAGTACTTTGAGTTCATGTGCAAGTTTGGGTTGGATCATGTTAGGACGACAAATACACTGTGAAGGGATCAAATGGGGGCTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTAACATTATACGCTGAAACTGATTATATGGATGAATGTCATAAAGTTTTCTTTCTTATGCCAGAGTATGATCAAGTTTCTTTGAATTGTTTTATTGGTGCACTAGCAACTTCAGAGGCATCAGTTTTACAGGCTATAAAATATTTCCTCCAGATGATGCAAGCTGGATGGAAACTTAACAGAGTGACATTTATAAATATTTTACCAGCAGTTTCTTCTCTTTCTCTTCTCGAACTAGGTCGTCAAATTCATGCTTTAATCTTAAAATACTCCATTGCTCCTGACAATGCTATTGAGAATGCACTTCTAGCTTTCTATGGAAAGTGTGAGCAGATGGAGGACTGTGAGATTATCTTTTCTAGAATGTCTGAACGAAGGGATGAAGTCAGCTGGAATTCAATGATTTCTGGATATATACACAATGGCATCCTGCACAAGGCCATAGATTTGGTATGGCTTATGATGCAAAGGGGCCATAGATTGGATGGTTTCACACTTGCCACCCTACTTAGTGCCTGTGCTTCAGTTGCAACATTAGAGCGTGGTATGGAAGTCCATGCATGTTCTATAAGAGCTGGTCTAGAATCTGATGTTGTTGTTGGTAGTGCACTAGTTGACATGTATGCAAAATGCGGAAGGATAGATTATGCTTCAAGATTCTTCGATTTGATGCCTGTGAGGAACATATATTCTTGGAATTCAATGATTTCAGGTTTTGCACGCCACGGACAGGGACGAAAAGCTCGAAAACTTTTTACTCAAATGAAACAGCATGGCCAATCACCAGATCATGTCACCTTCGTTGGGGTCCTATCAGCCTGTAGTCATGTAGGATTAGTTGATGAAGGATTTAAGCAATTCAAATCAATGAGTGAAGTATATGGCTTAGCTCCTCGAATAGAACACTTCTCTTGTATGGTAGACCTCCTTGGAAGAGCAGGTGATGTTAATAAGATTGAGGACTTTATCAAAACAATGCCAATGGATCCTAATGTACTTATTTGGAGAACAGTTTTAGGAGCATGTTGTCGATCAAATGGCCGTAATACAGAGCTAGGACGGAAGGCTGCGAAGATGCTTATTGAGTTAGAGCCACAGAACGCTGTGAACTATGTGCTTCTGTCTAACATGCATGCTGCTGGTGGGAAGTGGGAAGATGTGGCACAGGCTAGGTTGGCAATGAGGAATGCAGAAGTGAAGAAGGAAGCAGGGTGTAGTTGGGTGACCATGAAGGATGGAGTTCATGTGTTTGTGGCTGGAGATCAAACGCACCCGGAGAAAGTAAAAATCTATGACATGCTCAAGGAGATAATGAACAAAATGAGGGATGCTGGATATGTGCCTGAAACCAATTATGCACTCTATGATCTTGAGCTTGAAAACAAAGAAGAGCTCCTAAGCTATCATAGTGAAAAGCTGGCTGTTGCTTTTGTTCTCACTCGCAAATCCGAGCTCCCAATTAGGATAATGAAGAACCTTCGGGTTTGTGGTGACTGTCACACTGCTTTCAAATACATATCAAAGATTGTCAATCGACAGATAATTTTACGAGATTCAAATAGATTTCACCATTTTTATGGTGGCAAATGTTCTTGTGGGGATTATTGGTGA 3084 0.3988 MMFCFRRLLHNSTHALSAQLALSEQLLHHYNLKFPLLNLEYHQFKNSCCLEDAHQLHLQVYKSGFTYDVFWCNTLIDIYVRVGKLDSAQKLFDEMPQKNLVSWACLISGFVQNCMPDEACILFKGIISAGLSPNHYAIGSALRACQEHGPTKLKLGMEIHGLLSKSPYASDMVLSNVLMSMYSHCSASTDDARHVFDEIKIKNSASWNSIISTYCRRGDAISSFKLFSSMQRDSQLTCRPNEYTFCSLVTVACSLVDYGLTLLKQMLARIEKSGFLQGLYVGSALVSGFAKFGLIEPAKTIFEQMCDRNAVTMNGLIVGLTRQHQGEEVVKIFKEMKDFVEINADSYVVLLSAFTEFSNLKEGKRKGQEIHAYLIRNALINVWISIGNALVNMYAKCDAIDNARSIFKLMPSKDIVSWNSMISGLDHNERFEEAVACFHTMRRNGMVPSNFSVISTLSSCASLGWIMLGRQIHCEGIKWGLDLDVSVSNALLTLYAETDYMDECHKVFFLMPEYDQVSLNCFIGALATSEASVLQAIKYFLQMMQAGWKLNRVTFINILPAVSSLSLLELGRQIHALILKYSIAPDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYIHNGILHKAIDLVWLMMQRGHRLDGFTLATLLSACASVATLERGMEVHACSIRAGLESDVVVGSALVDMYAKCGRIDYASRFFDLMPVRNIYSWNSMISGFARHGQGRKARKLFTQMKQHGQSPDHVTFVGVLSACSHVGLVDEGFKQFKSMSEVYGLAPRIEHFSCMVDLLGRAGDVNKIEDFIKTMPMDPNVLIWRTVLGACCRSNGRNTELGRKAAKMLIELEPQNAVNYVLLSNMHAAGGKWEDVAQARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKVKIYDMLKEIMNKMRDAGYVPETNYALYDLELENKEELLSYHSEKLAVAFVLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVNRQIILRDSNRFHHFYGGKCSCGDYW* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1933 1027 PANTHER OS01G0913400 PROTEIN-RELATED 236 486 - -
Apr9g1933 1027 PANTHER OS01G0913400 PROTEIN-RELATED 53 147 - -
Apr9g1933 1027 PANTHER OS01G0913400 PROTEIN-RELATED 153 234 - -
Apr9g1933 1027 PANTHER OS01G0913400 PROTEIN-RELATED 586 970 - -
Apr9g1933 1027 PANTHER OS01G0913400 PROTEIN-RELATED 484 583 - -
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 467 565 IPR011990 GO:0005515
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 373 466 IPR011990 GO:0005515
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 255 372 IPR011990 GO:0005515
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 153 254 IPR011990 GO:0005515
Apr9g1933 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 72 99 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 101 130 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 489 513 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 591 616 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 311 338 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat 283 308 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 206 233 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 620 653 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 721 754 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Apr9g1933 1027 TIGRFAM PPR: pentatricopeptide repeat domain 72 100 IPR002885 -
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 566 679 IPR011990 GO:0005515
Apr9g1933 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Apr9g1933 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat family 719 766 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat family 202 253 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat family 618 665 IPR002885 -
Apr9g1933 1027 Pfam PPR repeat family 413 461 IPR002885 -
Apr9g1933 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 25 152 IPR011990 GO:0005515
Apr9g1933 1027 Gene3D Tetratricopeptide repeat domain 735 918 IPR011990 GO:0005515
Apr9g1933 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 484 583 - -
Apr9g1933 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 236 486 - -
Apr9g1933 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 153 234 - -
Apr9g1933 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 53 147 - -
Apr9g1933 1027 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 586 970 - -
Apr9g1933 1027 Pfam E motif 840 899 IPR046848 -
Apr9g1933 1027 Pfam E+ motif 905 932 IPR046849 -
Apr9g1933 1027 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 753 IPR002885 -
Apr9g1933 1027 Pfam DYW family of nucleic acid deaminases 936 1027 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1933 Apr-Chr9 27798166 27802150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1933 123 733 Glycoside Hydrolase AT3G49170 25.705 7.83e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1933 - - gmx:100800858 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1933 9 27798166 27802150 Apr9g1933 9 27798166 27802150 ECH