Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1844 ATGGCGCAGGTTCTGCACCTGGGTTTGCCTTTCATGGCAGAACCTCAGAAAATTTCTTCTTCTTCTTCCAAATCGTTGAAGCTTACCCATAGAACTCACAGTACCAACATATCCATTCCTACAAAGGGTGGTGCCAACCGTTTGCACAAAACCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTGTCAGCTGTTAGATTGATGAGGATTGAGCTTGGTGGTGCTTTTGCTGATCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAAATGGGATATGTTCAAAGAACTCTTGGCTTTCGCACTCGAGAATTAAATCATCACGATCTTAGATTGGTTACAGACATTGTTGGGGGCACGATTCGTTGGAGAAGATATCTTGATCATCTCATCAGTTCGCTCTGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCGCCTTATGCTGTTGTAGATGAGAACGTCAAGCTTGCTAAAGTTGCTCTCAGATCTGGTGCTGGAAACATGGTTAATGGAGTCCTTCGAAAGCTAGTTGTGCTTAAGGAGAATGAAACTCTTCCTTTCCCCAAAGTGGAGGGTGATGACCGTGCCCAAGCACGTGCTCTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGCATCTTGGCCAGGAAGAGGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAATAGGTTTTTCAAGAGATGACCTCGTCAAGCAGCTCAATGGATTGAAGGTCCCACACAAGCTTTCATTGCATTTGGATGAATTTGTTCGTCTCAAAACTGGGTTGCAGACTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCCCAACCTGGTGAAACCATCATTGATTGTTGTGCTGCTCCTGGTGGAAAAACACTCTACATGGCCTCTCAACTAAGTGGCCAAGGTATGGTATTTGCAGTTGATGTAAATCGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCGTTACCACCATCCATACTGATCTTCGTACATTAACTGATGGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGACACTCCTTGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTGGAGGATATAGAAGAACTGAAGAAATTACAGGATGAGCTCCTGGATGCAGCTTCCACATTGGTAAAGCCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTTGTAAGACATCCGGACTTCCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACAAAGGGGTTTCTTTTTCTCCAACCCAGTTAAGCATTCACTTGATGGATCCTTTGCAGCTCGATTAGTACGAGCTTTATAA 1581 0.4377 MAQVLHLGLPFMAEPQKISSSSSKSLKLTHRTHSTNISIPTKGGANRLHKTQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKVALRSGAGNMVNGVLRKLVVLKENETLPFPKVEGDDRAQARALATLYSHPVWMVRRWTKHLGQEEAIKLMIWNNSEPSFSLRANRAIGFSRDDLVKQLNGLKVPHKLSLHLDEFVRLKTGLQTVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASQLSGQGMVFAVDVNRGRLRILKETAKLHQVDGVVTTIHTDLRTLTDGEPLKSNKVLLDTPCSGLGVLSKRADLRWNRKLEDIEELKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDERVAAFLVRHPDFHIDPVDRYVPPDFVTQRGFFFSNPVKHSLDGSFAARLVRAL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1844 526 Pfam NusB family 93 199 IPR006027 GO:0003723|GO:0006355
Apr9g1844 526 Gene3D Vaccinia Virus protein VP39 323 525 IPR029063 -
Apr9g1844 526 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 103 524 IPR004573 GO:0006364|GO:0008649
Apr9g1844 526 Gene3D Sun protein; domain 3 216 322 - -
Apr9g1844 526 Gene3D - 78 209 IPR035926 -
Apr9g1844 526 PRINTS Viridiplantae FMU-related RCMT signature 67 90 IPR023268 -
Apr9g1844 526 PRINTS Viridiplantae FMU-related RCMT signature 91 107 IPR023268 -
Apr9g1844 526 PRINTS Viridiplantae FMU-related RCMT signature 206 219 IPR023268 -
Apr9g1844 526 PRINTS Viridiplantae FMU-related RCMT signature 483 495 IPR023268 -
Apr9g1844 526 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 29 525 - -
Apr9g1844 526 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 249 525 IPR001678 GO:0008168
Apr9g1844 526 CDD AdoMet_MTases 336 462 - -
Apr9g1844 526 PRINTS RNA (C5-cytosine) methyltransferase signature 309 323 IPR023267 GO:0001510
Apr9g1844 526 PRINTS RNA (C5-cytosine) methyltransferase signature 338 348 IPR023267 GO:0001510
Apr9g1844 526 PRINTS RNA (C5-cytosine) methyltransferase signature 406 418 IPR023267 GO:0001510
Apr9g1844 526 PRINTS RNA (C5-cytosine) methyltransferase signature 456 472 IPR023267 GO:0001510
Apr9g1844 526 PRINTS RNA (C5-cytosine) methyltransferase signature 507 524 IPR023267 GO:0001510
Apr9g1844 526 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 29 525 IPR023267 GO:0001510
Apr9g1844 526 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 221 524 IPR029063 -
Apr9g1844 526 SUPERFAMILY NusB-like 98 233 IPR035926 -
Apr9g1844 526 Pfam 16S rRNA methyltransferase RsmB/F 328 522 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1844 Apr-Chr9 27207946 27214762 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1844 K03500 - gmx:100779327 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1844 9 27207946 27214762 Apr9g1844 9 27207946 27214762 ECH