Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1837 ATGGCGCCTGTGGCAGGGAGAAGCACAGGCGCCGTTAGCGTTGGAGCTGCCATCTTCGTCTCACTCGCTGTCGCTTATTTCTTCTGCGACCGTCGCTTCAACTCATCGAAGAAGAAGAAGAAGAAGAAGAAATCTACGAAGGGGCTCGTCGACGCTATCGGAGACACTCCTTTGATTCGAATCAATAGCCTTTCTGACGCCACTGGTTGCGAAATTCTCGGCAAGTGCGAGTTTCTGAACCCTGGTGGCAGTGTCAAGGATCGTGTTGCAGTTAAAATCATTGAAGAGGCTTTGGAATCTGGCCAGCTACTTCCAGGTGGAATTGTTACTGAAGGGAGTGCTGGAAGCACCGCCATTAGCATTGCCACTGTTGCTCCTGCATTTGGATGCAAAACCCATGTTGTTATACCAGATGATGCTGCCACTGAGAAGTCTCAAACACTTGAAGCCCTTGGGGCAACTGTTGAGAGAGTACGACCAGTGTCAATTACTCACAAAGACCATTTTGTCAATATTGCAAGAAGGCGGGCATCTGAAGCTAATGAGTTTGCATCTAAGCATGGATATTCACATTTGAACGGCAAGGATGCAGAGAAAATAAATGGTCATGAATCTGATGGATACTGTCACAGCTCGGTCTTTTCTAATGATTGTCAAGGTGGCTTTTTTGCTGATCAGTTTGAGAACTTAGCAAACTTCAGGGCCCATTATGAGGGTACAGGGCCTGAGATTTGGGAACAGACCAAAGGAAATTTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGTACATTGGCTGGTGTTTCTAGGTTTCTTCAGGAAAAGAATCCAAGAATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAAGGTAACAAGGGGGGTGATGTACACCAAAGAGGAGGCAGAAGGACGAAGACTTAAGAATCCATTTGACACTATAACAGAAGGGATTGGAATTAACAGGATAACAAGAAATTTTGCGATGGCAAAACTTGATGGGGCATTTAGAGGCACAGATAGGGAGGCTGTTGAAATGGCCAGGTTTCTTTTGAAGAGTGACGGGCTCTTCCTTGGGAGTTCCTCTGCAATGAACTGTGTTGGAGCAGTTAGAGTAGCACAGTCAATTGGCCCTGGTCACACAATTGTAACCATTCTTTGCGACAGTGGAATGAGACATCTGAGCAAGTTCCACAGTGCCGAATACTTGACTCAGCTTGGTTTGACACCCAAAGCAACTGGATTGGAGTTCTTAGGTATCACATGA 1278 0.4624 MAPVAGRSTGAVSVGAAIFVSLAVAYFFCDRRFNSSKKKKKKKKSTKGLVDAIGDTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLLPGGIVTEGSAGSTAISIATVAPAFGCKTHVVIPDDAATEKSQTLEALGATVERVRPVSITHKDHFVNIARRRASEANEFASKHGYSHLNGKDAEKINGHESDGYCHSSVFSNDCQGGFFADQFENLANFRAHYEGTGPEIWEQTKGNLDAFVAAAGTGGTLAGVSRFLQEKNPRIKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFAMAKLDGAFRGTDREAVEMARFLLKSDGLFLGSSSAMNCVGAVRVAQSIGPGHTIVTILCDSGMRHLSKFHSAEYLTQLGLTPKATGLEFLGIT* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1837 425 PANTHER CYSTEINE SYNTHASE-RELATED 29 423 - -
Apr9g1837 425 Gene3D - 53 398 IPR036052 -
Apr9g1837 425 Gene3D - 83 233 IPR036052 -
Apr9g1837 425 PANTHER CYSTATHIONINE BETA-SYNTHASE 29 423 - -
Apr9g1837 425 Pfam Pyridoxal-phosphate dependent enzyme 51 392 IPR001926 -
Apr9g1837 425 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 39 406 IPR036052 -
Apr9g1837 425 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 75 93 IPR001216 GO:0006535
Apr9g1837 425 CDD CBS_like 54 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1837 Apr-Chr9 27150363 27153039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1837 53 399 Miscellaneous Gene Families AT3G04940 30.372 4.66e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1837 K01738 - gmx:100799081 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1837 9 27150363 27153039 Apr9g1837 9 27150363 27153039 ECH