Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1835 ATGGAGGGAAAGAGGATGAGGTCCGGATCACAGTCACAGCCACAGAGCGTGATTCTACTCGCCAAAATCAAAGAATTCACTCGAGTTTTGCTTTCAGACCTCACCAACGGACACTCTCCGCTTATTCATATTAATCGCTTTAGAAATTACTGCACCCTTCCAGACACCAACTGCTTTTGCGGCTCCGATTTGCCGTGCGGAAAGGAAGTTGTCACACTCCGCAGGGAATCTCACGTCCACCGATTAGATGTTATGTTGAGAGTGCTGCTGATTGTTCAGAAACTTCTGCAAGAGAATAAGCATAGTTCTAAGAGAGACATTTATTACATGCATCCATCTGTGTTTTCCGATCAGTTAGTGGTGGACAATGCAATTAATGATATATGTGTTCTTATGCAGTGCAGTCGTCATAACCTTAATGTGGTTTCTGCAGGGAATGGGTTAGTTATGGGCTGGATAAGATTCTTTGAAGGAGAAAGATTCTTTGACTGCATCAGTTCTCCCAACACCGCCCACCCTGTTCCTGTTCATGTTGAGGAAGTTAAAGATATCGTTAGTTTTGCTCATTACATATTAGTTGTTGAGAAGGAATCAGTTTTCCAAAGATTAGCAAACGATAAATTCTGTAATGCAAATCATTGCATTGTAATCACTGGAAGAGGCTACCCAGACATTCCTACAAGAAGGTTTTTGCGGCTTCTGGTTGAGAATTTGCACCTGCCTGCTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCAATGCACATGGCTTATGACACGACACATCTTCGTGTCCCAGAGATTCACTGGCTTGGAGCCTTTCCTTCGGATTTTGAGAGATATTCTGTTCCAAAGCAGTGTCTCCTTCCTCTGACTGCTGAAGACGAGAGAAAAATTGAAGCCATGTTGCACAGATGCTACCTGCAAAGGGAGGTGCCACAATGGAGGCTGGAGCTAAAGCTGATGCTACAGAATGGAGTAAAGTTTGAGATTGAAGCGTTATCTGTGCGAACACTTTCATTCTTGTCGGAGTTTTACATTCCGTCTAAAGTTCAAGGTAAAATGAAAATCTAG 1104 0.4284 MEGKRMRSGSQSQPQSVILLAKIKEFTRVLLSDLTNGHSPLIHINRFRNYCTLPDTNCFCGSDLPCGKEVVTLRRESHVHRLDVMLRVLLIVQKLLQENKHSSKRDIYYMHPSVFSDQLVVDNAINDICVLMQCSRHNLNVVSAGNGLVMGWIRFFEGERFFDCISSPNTAHPVPVHVEEVKDIVSFAHYILVVEKESVFQRLANDKFCNANHCIVITGRGYPDIPTRRFLRLLVENLHLPAYCLVDCDPYGFDILTTYRFGSMHMAYDTTHLRVPEIHWLGAFPSDFERYSVPKQCLLPLTAEDERKIEAMLHRCYLQREVPQWRLELKLMLQNGVKFEIEALSVRTLSFLSEFYIPSKVQGKMKI* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1835 367 PRINTS SPO11 homologue signature 110 130 IPR013048 GO:0003677|GO:0003918|GO:0042138
Apr9g1835 367 PRINTS SPO11 homologue signature 205 220 IPR013048 GO:0003677|GO:0003918|GO:0042138
Apr9g1835 367 PRINTS SPO11 homologue signature 252 271 IPR013048 GO:0003677|GO:0003918|GO:0042138
Apr9g1835 367 PRINTS SPO11 homologue signature 287 311 IPR013048 GO:0003677|GO:0003918|GO:0042138
Apr9g1835 367 PRINTS SPO11 homologue signature 348 367 IPR013048 GO:0003677|GO:0003918|GO:0042138
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 104 115 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 118 135 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 136 151 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 191 208 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 215 236 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PRINTS DNA topoisomerase VI subunit A family signature 247 263 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 11 364 - -
Apr9g1835 367 Gene3D - 8 144 IPR036388 -
Apr9g1835 367 Gene3D - 146 366 - -
Apr9g1835 367 CDD TOPRIM_TopoIIB_SPO 189 351 IPR034136 -
Apr9g1835 367 Pfam Type IIB DNA topoisomerase 81 141 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Apr9g1835 367 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 11 364 IPR002815 GO:0003677|GO:0003918|GO:0005694
Apr9g1835 367 SUPERFAMILY DNA topoisomerase IV, alpha subunit 79 363 IPR036078 GO:0003677|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1835 Apr-Chr9 27139540 27143263 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1835 K10878 - gmx:100813920 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1835 9 27139540 27143263 Apr9g1835 9 27139540 27143263 ECH