Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1774 ATGTTCTTCCACAAGGTTTTGTCCCGTTTCTCCACCTCTGCTTCTCGAAGCTCACTTCACTCTGCTTCTCGAAGATGCCAACACCTACCCATCTTCACCAATCAAGTACATTCTCTCGTTCCCCAACCATCCAATAAGTTGATTCCAGTTCAAGTCAAATTATTACCACCAGCGATAAATTCATTATCAACTCAAAGACTTGGGTTTTCTTCATTATCTTCAACTGAAACTAATGACAAAGAAAAAGGGAATAATGTACAAAATGGAGATTCTGCAAATGATGACCCTGCAAAAGCAAACGAAGAGGTGAAGAATATTGATCAAGCTGGACAAACTGAACCTGGAGATAAAACAGAGAAATCAGGTTCTAGTTCAGATTCTCAATCTCAGACTGTCAAAAGAAGAAGTGGAGGTATTAAACGAACTGCATTTTCTGATTCTGATTCAGATTCAGAGAGTGAATGTGATCTATCCAGGGATGATTTGATTAAACTAGTAGCGGAGAAGGAGGAACTTGTGCAGTTAAAGCACAAAGAGATTGAAAAGATGAAGGACAAAGTTTTGCGGACGTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCCATACAGAGTTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCTGTGGTAAAGGAGAGTTTTTCAAAAATTGATACATCAAGTGACTCTTCTGAAGCTGTAAAACTGCTGAAAACCCTTCTGCAAGGGGTTGAAATGACTGAGAAACAACTATCAGAGGTACTTAAAAAGTTTGGTGTTGAAAAGTTTGATCCTACAAATGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCTGATGGTTCCAAGCCTCCAGGAACTGTTGCAGTTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGCCCTGCGGAAGTTGGTGTAACTCAAGCGGTTGAGAATGATGGAAAAGATAGCATAGCTGAAAAAGGGTCATAG 1044 0.3994 MFFHKVLSRFSTSASRSSLHSASRRCQHLPIFTNQVHSLVPQPSNKLIPVQVKLLPPAINSLSTQRLGFSSLSSTETNDKEKGNNVQNGDSANDDPAKANEEVKNIDQAGQTEPGDKTEKSGSSSDSQSQTVKRRSGGIKRTAFSDSDSDSESECDLSRDDLIKLVAEKEELVQLKHKEIEKMKDKVLRTYAEMENVMERTRREADNSKKFAIQSFAKSLLDVADNLGRASSVVKESFSKIDTSSDSSEAVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAVVLKAGYMLYDRVIRPAEVGVTQAVENDGKDSIAEKGS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1774 347 ProSitePatterns grpE protein signature. 287 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 Pfam GrpE 167 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 PANTHER GRPE PROTEIN HOMOLOG 16 105 - -
Apr9g1774 347 PANTHER GRPE PROTEIN HOMOLOG 126 334 - -
Apr9g1774 347 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 277 332 IPR009012 GO:0006457
Apr9g1774 347 MobiDBLite consensus disorder prediction 70 157 - -
Apr9g1774 347 Hamap Protein GrpE [grpE]. 100 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 PANTHER GRPE PROTEIN 126 334 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 PANTHER GRPE PROTEIN 16 105 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 168 276 IPR013805 -
Apr9g1774 347 CDD GrpE 181 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 Gene3D Head domain of nucleotide exchange factor GrpE 276 331 IPR009012 GO:0006457
Apr9g1774 347 MobiDBLite consensus disorder prediction 70 94 - -
Apr9g1774 347 MobiDBLite consensus disorder prediction 105 136 - -
Apr9g1774 347 Gene3D - 161 275 IPR013805 -
Apr9g1774 347 Coils Coil 166 204 - -
Apr9g1774 347 PRINTS GrpE protein signature 188 204 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 PRINTS GrpE protein signature 284 299 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr9g1774 347 PRINTS GrpE protein signature 311 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1774 Apr-Chr9 26741549 26745899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1774 K03687 - gmx:100803396 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1774 9 26741549 26745899 Apr9g1774 9 26741549 26745899 ECH