Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1770 ATGCTCTGCTTCACTCAGAAACAGAGCATGGCTTCTCTCACATTCTCGTTCTCCCTCTTCTTCATGCTTACTACATTCTATGCTTCATCATCAGAAGCGGGTTCTATCGGAATTAACTACGGAAGAGTGGCGAACGACCTACCTACCCCGGCGAAGGTGGTGGAGCTTCTGAAGACTCAGGGTCTGAACCGTGTGAAGCTCTACGACACCGACGCCACCGTGCTAAACGCGTTTGCCAACTCGGGCATCAAGGTGGTGGTTGCCATGCCAAACGAGCTTCTCTCAAACGCCGCCGCGGATCAATCCTTCACCGACGCATGGGTCCAAGCAAACATCTCAAAATACTACCCAGCCACCCAAATCGAAGCCATAGCCGTGGGAAACGAAGTGTTCGTTGACCCAAACAACACCACAAAGTTCCTCGTACCTGCCATGAACAACGTCCACGCTTCACTCTCCAAGTACAACCTCGACAGCAACATCAAAATCTCGTCACCAATCGCACTCTCCGCTCTTCAAACCTCATACCCAACCTCGTCCGGTGCGTTCAAAACCGAACTGGTCGAACAGGTTATAAAACCGATGCTGGATTTCCTTCGCAAAACCGGGTCATACCTCATGGTTAACGCGTACCCGTTCTTCGCGTATTCGGCAAACTCCGACACGATCGCGTTGAACTACGCGCTCTTCAAGGATAACCCTGGGGTCGTTGATTCGGGTAACGGCTTGCGATACACGAACCTCTTCGACGCTCAAGTCGACGCCGTTTTTGCTGCCATGTCAGCACTTCAATACGACGACGTCAAGATCGAGGTTTCGGAGACGGGTTGGCCCTCCGCTGGGGACTCTAACGAGATTGGAGCTGGCCCAGACAATGCGGCGTCGTATAACGGAAACTTGGTTCGGCGCGTGTTGGGTGGGAGTGGAACCCCCTTGAGGCCCAAGGATCCACTTAACGTTTTTTTGTTCGCGCTCTTCAACGAGAACCAGAAACAAGGCCCAACATCGGAGAGAAACTATGGGCTTTTCTATCCAAGTGAACAGAAGGTTTATGATATTCCGTTGACGGTTAAGGAGGTTAATGAAGCGCCTTCAAACAGCGTGTCGAAGAGTGAGGTTCCGGTGTCGACGACGTCGTTTCGGGGCCAGACGTGGTGCGTGGCGAACGGTGCTTCTTCGGTTGAGAAGCTGGCGAACGCTCTTAATTACGCATGTGGGGAAGGTGGTGCTGATTGCACTCCAATTCAACCGGATGCCACGTGTTACAATCCCAACACGTTGGAGGCTCACGCTTCCTACGCTTTCAACAGTTACTATCAGAAGAAGTCACGTGCAACTGGCACGTGCGATTTTGGTGGGACTGCTTATGTCGTCACTCAACCTCCCAAGTATGGGAACTGCGAATTCCCCACAGGATACTGA 1422 0.5225 MLCFTQKQSMASLTFSFSLFFMLTTFYASSSEAGSIGINYGRVANDLPTPAKVVELLKTQGLNRVKLYDTDATVLNAFANSGIKVVVAMPNELLSNAAADQSFTDAWVQANISKYYPATQIEAIAVGNEVFVDPNNTTKFLVPAMNNVHASLSKYNLDSNIKISSPIALSALQTSYPTSSGAFKTELVEQVIKPMLDFLRKTGSYLMVNAYPFFAYSANSDTIALNYALFKDNPGVVDSGNGLRYTNLFDAQVDAVFAAMSALQYDDVKIEVSETGWPSAGDSNEIGAGPDNAASYNGNLVRRVLGGSGTPLRPKDPLNVFLFALFNENQKQGPTSERNYGLFYPSEQKVYDIPLTVKEVNEAPSNSVSKSEVPVSTTSFRGQTWCVANGASSVEKLANALNYACGEGGADCTPIQPDATCYNPNTLEAHASYAFNSYYQKKSRATGTCDFGGTAYVVTQPPKYGNCEFPTGY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1770 473 SUPERFAMILY (Trans)glycosidases 36 353 IPR017853 -
Apr9g1770 473 SMART X8_cls 384 469 IPR012946 -
Apr9g1770 473 Pfam X8 domain 384 455 IPR012946 -
Apr9g1770 473 Pfam Glycosyl hydrolases family 17 36 353 IPR000490 GO:0004553|GO:0005975
Apr9g1770 473 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 466 IPR044965 GO:0004553|GO:0005975
Apr9g1770 473 Gene3D Glycosidases 34 363 - -
Apr9g1770 473 Gene3D - 378 469 - -
Apr9g1770 473 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 17 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1770 Apr-Chr9 26713285 26715332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1770 31 462 Glycoside Hydrolase AT5G55180 71.759 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1770 - - gmx:100803406 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1770 9 26713285 26715332 Apr9g1770 9 26713285 26715332 ECH