Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1752 ATGGAGGACATGGACGAGATCGATGCCGTTCCTCAGGTTTACATGGCTTGCATTCTAAATGGTAACAGAATAGGAGTATCTTACTATGATTCAACCCTTCGCCAACTTTTTGTGCTTGAAGTTTGGGATGATGGTGACAAAGGTTTTCCAGTTATTGATCTGGTTAAATATCAAGCAAACCCTTTGGTCATTTACACAAGCACAAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACGAAGTGATGGACTAGCTGAGCCTCCTACATTAAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAACATGGCATAGATTAATTTACCTTCGGGTGGCGGGGATGGATGATGGATTAAATGTCAAGGAGAGGATTCACTATTTGAGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGCGGCCTTCTGACAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCCGGAAATAAATCAATTACAATAGATTCTGTAGCAGAAATATCACTAAATAACTTTCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAACAGACAAACACCCGAGCCACATGGGAATTGGTAGAGCAAAAGAGGGGTTTTCTGTATTTGGAATGATGAATAAGTGCGTGACTCCAATGGGTAGACGTCTTTTGAGAAACTGGTTCTTGAGACCTATACTTGATCTTGAAGTTCTAAACTACCGTTTGAATTCTATATCTTTCTTTCTATGCTCAGAAGATATTGTTGCTTCTTTACGTGAAACCCTGAAATCTGTGAAGGATATCCCCCACTTGCTCAAGAAATTTGACTCTCCAAGCTCCATATGCACCAGCTCTGATTGGACAGCTCTTCTAAAGAGTATTTGTGCGCTGCTGCATGTAAACAAGATATTTGAAGTTGGAATTTCTGAAGGTCTTCGAGAAGAGTTGAAGTACTTGAACTTGGATATTGTTGAGAAGGCAAGTTCATGCATAACAACAGAGCTTGCTTATGTCTATGAGCTGGTAATTGGTGTTATTGATGTGAATAGAACTAAAGAAAAGGGATATGCGACAGTGGTGAAAGAAGGTTTTTGTGACGAGTTGGATGAGCTTAGGCAAATATATGAGGAACTGCCAGAATTCCTGGAAGAGGTTTCATCATTGGAATTAGCACAACTTCCGGTTGTATGCAAGGAGAAGCACATTCCTTGTATTGTTTATATACAGCAAATAGGATATTTAATGTGTATCTTTGAAGAAAAACTTGAAGCAACCATTCTGGAAAAACTTGTGGATTGGGAATATATATTCGGTGATGCAGATGAAGAGACAAAAAGATACTTTTATCATACCCCGAAGACACGAGAATTGGACAGTCTGTTAGGAGATATCCATCATAAAATTCTAGACATGGAGAGGGCGATCACCAGAGACTTGTTTTCACGAATACTGTTGTTCTCATCCCATTTGATAAAGGTGGCAACTTTTGCAGCTGAGCTGGACTGCTTTTTGTCAATGGCTTTGGTTGCTCGGCAGAACAATTATGTCAGGCCTTTGTTGACTGAAGAAAACTTGCTTGAGATAAAAAGTGGAAGGCATGTTTTACAGGAAATGACTGTAGACACATTTATTCCGAATGACACTAAGATTCTTCATGACGGAAGAATTAATATCATCACTGGTCCTAATTTTTCTGGGAAAAGTATCTATATAAAGCAGGTGGCTTTAATAGTTTTCCTCTCCCACATTGGTAGTTTTGTGCCAGCTGATGCAGCAACTGTGGGTCTGACAGATAGAATATTTTGTGCAACAGGAAGCAAGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAATCGGGATGATGCTCAGGCATGCTACTTCACGATCTCTGTGTCTGGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGATGGCATTGGTCTACTTGCTGGGACCATAAATCACTTTGTCATGCGTGATGAACCTCCAAAGGTTTTTGTGTGCACTCATCTCATGGATTTGTTGCATGGGCATTCTTTGACCAAGTCTGAGCAGATTAAGTTTTACACAATGAGTATATTGAGGCCTGATAACAATTCCACCTATATTGAAGACATTGTGTTCTTATACAGGCTTGTCCCTGGACATGCGCATCATAGCTATGGGCTGCACTGTGCACTGCTGGCTGGTGTACCTGACGAAATCATAAAAAGAGCAGCAGTTGTGTTGGATGCTGTTTCAAATAATAATTATATTGAGCGGTTATGCAATGAGAACATCTCAGCTCAAGATCGTCAATACGAGGATGCCATGGAGAAATTGTTGGAATTCGATATTGACAAAGGCGACTTAAAACAATTCTTCGAGGATATATTTTTTCTAGTTCCTAACGCATCGTGA 2439 0.3969 MEDMDEIDAVPQVYMACILNGNRIGVSYYDSTLRQLFVLEVWDDGDKGFPVIDLVKYQANPLVIYTSTKSEESFLSALQRSDGLAEPPTLKLVKSSIFSYEQTWHRLIYLRVAGMDDGLNVKERIHYLSSMMDMGSEVQVRASGGLLTILENERIVDTLEQKESGNKSITIDSVAEISLNNFLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEDIVASLRETLKSVKDIPHLLKKFDSPSSICTSSDWTALLKSICALLHVNKIFEVGISEGLREELKYLNLDIVEKASSCITTELAYVYELVIGVIDVNRTKEKGYATVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPVVCKEKHIPCIVYIQQIGYLMCIFEEKLEATILEKLVDWEYIFGDADEETKRYFYHTPKTRELDSLLGDIHHKILDMERAITRDLFSRILLFSSHLIKVATFAAELDCFLSMALVARQNNYVRPLLTEENLLEIKSGRHVLQEMTVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCATGSKLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVMRDEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPDNNSTYIEDIVFLYRLVPGHAHHSYGLHCALLAGVPDEIIKRAAVVLDAVSNNNYIERLCNENISAQDRQYEDAMEKLLEFDIDKGDLKQFFEDIFFLVPNAS* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1752 812 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 22 802 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Apr9g1752 812 SMART mutATP5 562 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr9g1752 812 PIRSF Msh6 2 805 IPR017261 GO:0006298|GO:0030983
Apr9g1752 812 ProSitePatterns DNA mismatch repair proteins mutS family signature. 642 658 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr9g1752 812 PANTHER MUTS PROTEIN HOMOLOG 5 22 802 - -
Apr9g1752 812 Pfam MutS domain III 190 515 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr9g1752 812 SMART DNAend 211 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr9g1752 812 Gene3D - 183 419 - -
Apr9g1752 812 SUPERFAMILY DNA repair protein MutS, domain III 186 522 IPR036187 -
Apr9g1752 812 Pfam MutS family domain IV 371 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Apr9g1752 812 Gene3D - 523 795 IPR027417 -
Apr9g1752 812 CDD ABC_MSH5_euk 535 744 - -
Apr9g1752 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 759 IPR027417 -
Apr9g1752 812 Pfam MutS domain V 566 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1752 K08741 - gmx:100797567 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1752 9 26585001 26599276 Apr9g1752 9 26585001 26599276 ECH