Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1024 ATGGCTTCTTTCGCTTCCACAGCTGTCACTGCAACTCTCAAGCTCCACCCACAATTCCGAAAATACCCACCAACCTCCTATCCCGCCGAAAAGGGTCAAAGCATTTCTTTACAGAAAAGCTACAGATTCACTCATTTGGATCAAAGCAGGTATCTGGATTTTCGGGAAGAACTTTGGTTGACCAAAGAAGGGACAGAAGAGGAGGTGGAACAATCTTTCTACCTTCCCTTGTTGCAAAAATGCTTAGATAAGTGCTCCTATTCAGACACACAAATAGTTCATGGTCATGTCATGAAAACAGGTACCCATGAAGACGTTTTTGTCATGTCATTTCTGGTCAACGTTTACGCCAAATGTGGGAACATGGAGGGTGCTCGCAGAGTCTTTGACTACATGCCAAGAAGAAATGTGATGACTTGGACCACGTTAATGGTGGGTTATGTGCAAAACATGCAGCCAAAGCATGCAATTCATGTGTTTCAAGAGATGTTGCATGAAGGAAGTTACCCTTCTGTTTACACTCTTGCTATAGCTCTGAATGCTTGTAGTTCCTTGCACTCTTTTAAGTTAGGGGATCAGTTTCATGCTTACCTAGTGAAATACCATGTTGACTTTGACACAAGTGTTGGCAATGCGCTTTGTAGTTTGTACTCTAAATGTGGCAGGTTGGAATTTGCTCTGAAAGCATTTAGGAGAATCGAGGAAAAAAATATTATTTCTTGGACTTCGGCTGTTTCGGCTTGTGGGGACAATGGTGAACCAGTGAAGGGTTTAGGACTTTTTGTTGAAATGGTTTCTGAGGACATAAAGCCTAATGAGTTCACTTTAACTAGTGTCTTGAGCCAGTGTTGTGAAACAGTGTCTTTAGGATTTGGGACTCAGGTTCATTCTATGTGCACTAAATTGGGGTATGAGTCAAACCTACGGGTTAGGAATTCTTTGTTGTATTTGTACCTCAAAGGTGGTTGTGTTGGTGAGGCTCAAATGTTGTTTAATGGAATGGATTATATGAGTTTGGTTACGTGGAATGCGATGATTGCTGGACATGCACAAATGATGGAACTCACAAAGGATAATCTTTCTGCTTGTCAATGTGGGAGTGAAGCACTGAACCTTTTCTCCAAGCTGAATCGGTCAGGTATGAAACCTGATCTGTTTACCTTCTCAAGTGTGTTAAGTGTTTGTAGTAGAATGGTGGCTTTAGAGCAGGGGGAACAAATTCATGCTCAGACTATCAAAACCGGATTCTTGTCGGATGTGGTTGTAGGTACTTCACTGATTAATATGTACAACAAATGTGGAAGTATTGAGAGGGCTAGCAAAGCATTTCTAGAGATGTCTACTAGAACTATGATATCATGGACTTCTATGATCACAGGTTTTGCACACCATGGTATGTCACAACAAGCATTGCATCTTTTTGAGGACATGAGATTAGCAGGAGTTAGACCAAATCAGATCACTTTTGTGGGTGTTTTAGCAGCATGTAGCCATGCTGGCAGGGTCAGGGAAGCACTCAACTACTTTGAGATTATGAAAAAGGAATATAAAATTAAACCTGTGATGGACCATTATGCTTGCATGGTTGATATGTTTGTGAGGTTAGGTAAGCTGGAGGAAGCTTTCAATTTCATTAAGAAAATGGGTTATGAGGCTAGTGAGTTTATATGGTCGAACTTGATTGCTGGTTGTGCAAACCATGGGAATCTGGAATTGGGCTGTTGTGCTGCTGAACAATTACTAAGTCTCAAACCAAAAGATACAGAGACGTATGTGGTGTTGTTGAATATGTACCTCTCAGCCGGGCGATTTGAGGATGTTTCAAGGGTGAGGAAGCTGATGAAAGAGGAAGAAGTTGGAAAACTGAAGGATTGGAGCTGGATTAGCATCAAAGACACAGTGTATTCATTTAGAACAAATGACAAAGCACACCCACAGTGTTCACTCTTATGTAAATCATTGGAGGATTTACATGCCAAAGCCAAGAATCTTGGATACGAGAAGCTAGAAAGTATAGAAATAAGTAATGAAGAGGAGGAAGAAAAGACGTCATCTTCTACCATTTATCACAGCGAGAAGCTGGCCATTACATTTGGGTTGGAGAACTTGCCAAATTCTTCACCAATAAGAGTTGTGAAAAATACCTCAATATGCAGAGATTGCCATAATTTTATTAAGTACATCTCAACACTGACTGGTAGGGAAATCATTGTTAAAGATAGTAAGCGGCTTCACAGATTTGTCAATGGGCAATGCTCATGTGGAAATTTTGGTGGCTTTCTCTAA 2286 0.4081 MASFASTAVTATLKLHPQFRKYPPTSYPAEKGQSISLQKSYRFTHLDQSRYLDFREELWLTKEGTEEEVEQSFYLPLLQKCLDKCSYSDTQIVHGHVMKTGTHEDVFVMSFLVNVYAKCGNMEGARRVFDYMPRRNVMTWTTLMVGYVQNMQPKHAIHVFQEMLHEGSYPSVYTLAIALNACSSLHSFKLGDQFHAYLVKYHVDFDTSVGNALCSLYSKCGRLEFALKAFRRIEEKNIISWTSAVSACGDNGEPVKGLGLFVEMVSEDIKPNEFTLTSVLSQCCETVSLGFGTQVHSMCTKLGYESNLRVRNSLLYLYLKGGCVGEAQMLFNGMDYMSLVTWNAMIAGHAQMMELTKDNLSACQCGSEALNLFSKLNRSGMKPDLFTFSSVLSVCSRMVALEQGEQIHAQTIKTGFLSDVVVGTSLINMYNKCGSIERASKAFLEMSTRTMISWTSMITGFAHHGMSQQALHLFEDMRLAGVRPNQITFVGVLAACSHAGRVREALNYFEIMKKEYKIKPVMDHYACMVDMFVRLGKLEEAFNFIKKMGYEASEFIWSNLIAGCANHGNLELGCCAAEQLLSLKPKDTETYVVLLNMYLSAGRFEDVSRVRKLMKEEEVGKLKDWSWISIKDTVYSFRTNDKAHPQCSLLCKSLEDLHAKAKNLGYEKLESIEISNEEEEEKTSSSTIYHSEKLAITFGLENLPNSSPIRVVKNTSICRDCHNFIKYISTLTGREIIVKDSKRLHRFVNGQCSCGNFGGFL* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1024 761 Pfam PPR repeat family 452 496 IPR002885 -
Apr9g1024 761 Pfam PPR repeat family 135 183 IPR002885 -
Apr9g1024 761 SUPERFAMILY TPR-like 428 607 IPR011990 GO:0005515
Apr9g1024 761 Gene3D Tetratricopeptide repeat domain 193 290 IPR011990 GO:0005515
Apr9g1024 761 Gene3D Tetratricopeptide repeat domain 293 409 IPR011990 GO:0005515
Apr9g1024 761 Gene3D Tetratricopeptide repeat domain 65 192 IPR011990 GO:0005515
Apr9g1024 761 PANTHER OS01G0913400 PROTEIN-RELATED 66 694 - -
Apr9g1024 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 135 IPR002885 -
Apr9g1024 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Apr9g1024 761 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 66 694 - -
Apr9g1024 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Apr9g1024 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Apr9g1024 761 Pfam PPR repeat 525 548 IPR002885 -
Apr9g1024 761 Pfam PPR repeat 215 238 IPR002885 -
Apr9g1024 761 Pfam PPR repeat 312 334 IPR002885 -
Apr9g1024 761 Pfam PPR repeat 424 447 IPR002885 -
Apr9g1024 761 Pfam PPR repeat 239 268 IPR002885 -
Apr9g1024 761 Pfam E motif 567 628 IPR046848 -
Apr9g1024 761 Gene3D Tetratricopeptide repeat domain 467 681 IPR011990 GO:0005515
Apr9g1024 761 Pfam DYW family of nucleic acid deaminases 674 757 IPR032867 GO:0008270
Apr9g1024 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Apr9g1024 761 TIGRFAM PPR: pentatricopeptide repeat domain 139 171 IPR002885 -
Apr9g1024 761 TIGRFAM PPR: pentatricopeptide repeat domain 488 520 IPR002885 -
Apr9g1024 761 TIGRFAM PPR: pentatricopeptide repeat domain 239 273 IPR002885 -
Apr9g1024 761 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1024 Apr-Chr9 19559018 19562249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1024 85 757 Glycoside Hydrolase AT3G49170 35.953 9.30e-145 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1024 - - gmx:100781103 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1024 9 19559018 19562249 Apr9g1024 9 19559018 19562249 ECH