Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1023 ATGGCTCTTCGCAGACTCTCCTCCACCATCCCCAAACCTTTCACCAACGCCGTCTCTATTTATCGCACGTCCTCTTCGCTCTCCGCGCAAGACAGAGACAAATCTCGCGTCGATTGGATAAAGCAGCTCAACGATCCTCTCGAGGCCGTGGATCCCGAGGTCGCGGACATAATCGAACTCGAAAAAGCTCGTCAATGGAAGGGACTCGAACTTATACCTTCAGAAAATTTCACGTCGTTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATATAGTGAAGGATACCCCGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACTTTCTGTCAGAAGCGTGCATTAGAAACTTTTGGGTTGGATCCATCGAAATGGGGAGTTAACGTGCAGTCATTATCTGGGTCACCTTCTAACTTCCAAGTTTACACGGCTTTATTGAAACCCCATGAGAGAATTATGGCGCTTGATCTTCCCCATGGTGGGCATCTATCTCATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACGATGCCTTACAAATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAAAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGTCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTTTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATATTTTTCAGAAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTACGAAGACAAAATAAATCAGGCCGTCTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTGCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAGGTTCTTAGTAACTGCTCTGCATTTGCACAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGATAACCATTTAGTGTTAGTGAACTTAAGGAACAAGGGCATTGATGGTTCAAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATACTGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGAGGCATCCGAATGGGAACCCCTGCTCTCACATCCAGGGGTTTTGTTGAGGAGGATTTTAAAAAAGTGGCTGAATACTTTGATGGGGCAGTCAAGTTAGCCTTGCAGATTAAGGGAAATACTAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAATCAGATGAACAGATTCAATCGAAGATTGCTAATCTTCGTCATGAAGTAGAGGGTTATGCTAAGCAGTTTCCCACCATTGGTTTTGAGAAAGAAACAATGAAGTATAGTAAGTGA 1530 0.4346 MALRRLSSTIPKPFTNAVSIYRTSSSLSAQDRDKSRVDWIKQLNDPLEAVDPEVADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETFCQKRALETFGLDPSKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYELVSGGTDNHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDGAVKLALQIKGNTKGTKLKDFVEAMQSDEQIQSKIANLRHEVEGYAKQFPTIGFEKETMKYSK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1023 509 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 3 508 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr9g1023 509 Hamap Serine hydroxymethyltransferase [glyA]. 46 499 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr9g1023 509 Pfam Serine hydroxymethyltransferase 47 444 IPR039429 -
Apr9g1023 509 Gene3D - 76 349 IPR015421 GO:0003824
Apr9g1023 509 PIRSF SHMT 27 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr9g1023 509 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 270 286 IPR019798 GO:0030170
Apr9g1023 509 SUPERFAMILY PLP-dependent transferases 42 499 IPR015424 -
Apr9g1023 509 Gene3D Aspartate Aminotransferase, domain 1 51 496 IPR015422 GO:0003824
Apr9g1023 509 CDD SHMT 50 471 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr9g1023 509 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 3 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1023 Apr-Chr9 19550696 19557590 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1023 K00600 - gmx:100816213 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1023 9 19550696 19557590 Apr9g1023 9 19550696 19557590 ECH