Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0994 ATGCGTGTCACCATTGATCTAGGGTTTTCGAGCCTGCTCCTCGTCGCGGTGGTTTTCTGCGTCGTGCCGGCGATCGCCTTCGTGCTGCGTCGCAAGTGGCGAAGCGCGGCGGCGAGGGCGGAGGAGATCAAGAGGCTTCTGGTTCTCGCGGAGGAGGAGTCTGCCAGGGCCGAGAGCGAGGCTTCGTACCAGTACGACGCCGTTTTAGTTCCGAAGGAAAAACGATGTGTCGTGTGTTACTGCCCCACCACGACGCGGTGCGCGCGGTGCAAAGCGGTTCACTACTGTTCTGGCAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGATGAATGCCATCCTCCAAGGCCCAACACAACTTGCCAGACTAATGATCTTGTAGGTGATTTTGGAAAGACGGCAGCAGAACCAGACTACCATGGAATCCGTGATGAGAAGTCTCGGATTGAAAGCACAGACTGCACCACATCCTCTGAGAGACCCCCATTGTCTAATATGAGCTGTCCTGAAATCTCACGTGCAAAGGATGATAATGTAAGAGTTGAGTCACTTCAAGGGGAGAACATTATGGACCCAAATTCTGAATTATCTAGTAACTCATTCTCTGGATTCTCAGCTTCTGCTAGTGCTACTGAATCATCTGATGATTCTTCTTTCTGTGAGAGTATCACTTCAAATGAGAATGAAAGATCTGACGGACATATTTTTGGGGATCCCACCCATGAAATTACTGATTCTGCTTCAAATCATAATAGCATTGGTTTATCCACTCCATTGTCACCTATGTTTGCTAGTTTGGTTGATTCAGTAGATGACTGTCCTGCAATGCATAAATTAAATCAAGTTAGACCTGATTTTGGTAAAGAAGAGAACAAGTACACATCAACTGGTAGTTCAGGTTTGAGTATAAGGAAAGGGGCAACAATTGAGCCTTCTACAGTGTCTTCTGGATTTTGGAATAGAACTCTTGATTCAACAGGGATAAAAGATGACTCTAAGAGTGATCTGCTTCCACCCTACTCTGATGATTCTCCTCCAAAGTCTGTTGTGAACAGTATGCCATGTGCAGGATCTGCATCTTCAGAGAATGGGGGTGTTCATTCTTCAGATTGTGCTGATGCTTTGAGCATCCGTAACTTGCAAATGGTTGGTTCTACAGTATCAAATCATGTTGTCAGCAAACCTGGTAGCACCTTGAAGTCAGCTGAAAGTAGATATCTGCCACGTGCTTTTGCTGATGCTAAGTTAGTATCTAGAACTGAAGAGCATTCACATTATAGTACAAAATTTGGGAATAATGGTATCCAATCGGGCACTGCCACTTCATCTCAGGTTGTTAGCTGTTCTCCAAATTCTAAGAATGGCCTGAGAACATCATCTGTTCTGCAAGTTGCTGATCAGTTTAGTGGATCAAATTTGTCTAAACACTCTCCAATAACTGTTGGGAGTGATATCACTGGAAAATACAGTGACAAGTTTATGCAGGGTCTGTTTCCGTATGATTTGTTTGTCAAGCTTTATAACTGGAACAAAGTGGAGTTGCAGCCATTTGGTCTTATAAATTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCATTTACACCACCCCTGACTGCTTATTTGCTCCAAGGACTTCATTCCAAGTCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCCAAAGACACAAAATCTCCTGTCTCACCTACGGGCATAATCTCTCAACTACAAAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCTTGCTGTCGAGACAATGCAAGCTGTTTGCCTTATGGAACCTGGGGCTAACACATCAGACTCGATAAAAGAGGAAACTAATTTAATGGGCCTAACTTTTGGAGGCTACCTTCAATCAAAGATAAAATGTATGAAATGTGGGGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAGCAACACTTGAAGAGGCCCTTCAACAGTTTACAAGCACTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGCAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTTAGAGGCACCTAATGTTCTTACAATTGCGTTAAAGAGATTTCAGTCTGGAAAATTTGGGAAGCTCAATAAACCTATTCAGTTTCCTGAAATACTTGACTTAGCACCATTCATGAGTGGGACTAGTGACTTACCTATATACAGGCTATATGGGGTAGTTGTTCACTTGGATATCATGAATGCTGCTTTTTCGGGTCACTATGTGTGCTATGTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGACAGTTTGGTGACAGCTGTTGAATTGGAAAGAGTCTTGACAAAAGGAGCATACATGCTTTTTTATGCGAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGAACAGTATAGTATCTTCAGATTCAAAATGGAAAGTCCATGGAAAAACTGTTGCAAAGAAGTCGAGACATGTATCTACACTTTCTGGTGCTGGTGAAAATATGACTAGTTCGACTTTTCCAGCTGGTTCACACACCTTAGAGAGTATATATTCGAAGTTTCACCACCTGAAAAGGATTTTGGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACTGATAGCACTTGTGATTCAACGAGTACTGATGACTTTACCGATTATATTTTTGGTGATTCTGGACGTGTCTTGGGTGGCATATTGAGAAATTCTGATACTGACATTTCATCCGCATTGTCATCATCTCACTTGAACTCTAGACATTTGCCCTCTTCTGATGTTGACCCAAATGATTCAGTTTTCCAACTTGCAACTGGGTTCCAACTCCAACCACCTCCCCCAGGTCCAAGGGTGGAGATAAACGGTCTGTTGTACAGGAGCAGACCAGTGGATGTTAAAAGGAATGGAGGAATTGTTTCTCATATGCATCCTGACACAATTAGAGAGCATAGAAAGTTAGATACAAGTAGGAGTATTAGCTTTAGGGAGACTGACTCTATACAGAGAGCAGGATCCAACCATTTTAATGAGAGAAGAAATTCTGGTGTATCATGTATAAAATCGAGGGACAGAACGGATTGA 3207 0.4275 MRVTIDLGFSSLLLVAVVFCVVPAIAFVLRRKWRSAAARAEEIKRLLVLAEEESARAESEASYQYDAVLVPKEKRCVVCYCPTTTRCARCKAVHYCSGKCQIVHWRQGHKDECHPPRPNTTCQTNDLVGDFGKTAAEPDYHGIRDEKSRIESTDCTTSSERPPLSNMSCPEISRAKDDNVRVESLQGENIMDPNSELSSNSFSGFSASASATESSDDSSFCESITSNENERSDGHIFGDPTHEITDSASNHNSIGLSTPLSPMFASLVDSVDDCPAMHKLNQVRPDFGKEENKYTSTGSSGLSIRKGATIEPSTVSSGFWNRTLDSTGIKDDSKSDLLPPYSDDSPPKSVVNSMPCAGSASSENGGVHSSDCADALSIRNLQMVGSTVSNHVVSKPGSTLKSAESRYLPRAFADAKLVSRTEEHSHYSTKFGNNGIQSGTATSSQVVSCSPNSKNGLRTSSVLQVADQFSGSNLSKHSPITVGSDITGKYSDKFMQGLFPYDLFVKLYNWNKVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKSPVSPTGIISQLQNIGSQLGNGREEDAHEFLRLAVETMQAVCLMEPGANTSDSIKEETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALQQFTSTETLDGENKYHCVSRCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDLPIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQSRWFKVDDSLVTAVELERVLTKGAYMLFYARCSPRAPRLIRNSIVSSDSKWKVHGKTVAKKSRHVSTLSGAGENMTSSTFPAGSHTLESIYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTCDSTSTDDFTDYIFGDSGRVLGGILRNSDTDISSALSSSHLNSRHLPSSDVDPNDSVFQLATGFQLQPPPPGPRVEINGLLYRSRPVDVKRNGGIVSHMHPDTIREHRKLDTSRSISFRETDSIQRAGSNHFNERRNSGVSCIKSRDRTD* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0994 1068 Pfam MYND finger 76 113 IPR002893 -
Apr9g0994 1068 Gene3D Cysteine proteinases 511 832 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 330 369 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 137 154 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 133 177 - -
Apr9g0994 1068 Coils Coil 40 60 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 205 250 - -
Apr9g0994 1068 Pfam Ubiquitin carboxyl-terminal hydrolase 518 820 IPR001394 GO:0004843|GO:0016579
Apr9g0994 1068 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 519 534 IPR018200 GO:0004843|GO:0006511
Apr9g0994 1068 Gene3D - 68 116 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 898 921 - -
Apr9g0994 1068 SUPERFAMILY Cysteine proteinases 514 826 IPR038765 -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 205 227 - -
Apr9g0994 1068 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 518 823 IPR028889 -
Apr9g0994 1068 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Apr9g0994 1068 SUPERFAMILY HIT/MYND zinc finger-like 72 117 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 1049 1068 - -
Apr9g0994 1068 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Apr9g0994 1068 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 1050 - -
Apr9g0994 1068 MobiDBLite consensus disorder prediction 346 368 - -
Apr9g0994 1068 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0994 Apr-Chr9 19041597 19052916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0994 498 869 Miscellaneous Gene Families AT4G31670 48.396 1.45e-120 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0994 K11855 - gmx:100782303 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0994 9 19041597 19052916 Apr9g0994 9 19041597 19052916 ECH