Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0916 ATGAATGTGGATCCAAAGAAAACTGCCTCTAATGGCCAGGAGAAAATGTTGACATCACAAGAACAGCAAGCATTGATCAATGAGGTGAGAAGGTTAATTGGGCCACTGTCTGGTAAGGCATCCATTTATTGTTCCGATGCATCAATAGCAAGGTATTTAAGGGCGCGAAATTGGAATGTCAAGAAGGCAACTAAAATGTTGAAGCAGACTCTGAAATGGAGAGAAGAATACAAACCAGAAGAGATCCGCTGGGAAGATGTTGCTCATGAAGCAGAGACAGGAAAAATCTATAGAACAAATTATATTGACAAGCACGGGAGAACAGTCCTAGTAATGAGACCTGGTCGCCAGAACTCAAAGTCAACAAAAGGACAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTTTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGCTGATTGACTTCCAGGGTTTCAATATGTCACATATTTCAATAAAGGTGACACGGGAAACTGCCCATGTCTTACAAGAACATTATCCTGAACGGCTGGGTCTGGCAGTATTGTATAATGCACCTAAGTTCTTCGAACCATTCTTCATGATGGTAAAGCCCCTATTAGAGCCTAAGACATACAACAAAGTCAAGTTCGGCTACTCTGATGATCAGAACACTAAGAAGATCATGGAGGATTTGTTTGATATAGACCATCTTGAATCTGCTTTCGGTGGGAATGATGATACAGGATTTGACATAAATAAATATGCTGAGAGAATGAGAGAGGATGATAAGAAGATTCCCTCTTTCTGGACAAGGGAAAACTCCCCATCATCCGTCCCAAACAATGTTCCTTCTTTAGATTCAATTAGGTTAGACTCAAATTCTGATGCTTCTGACAATGAGAAATTAGACTCTTCCCCTGACCCCAAGATGGATACAGGCATCATTAACCCTGAAGAGAATATATCTGTTAATGAAGGGGGGAAAAATGCCATTGAAGATATGCATTTGAATGAGAAATTAGATACCTCAGGCCTTTGA 1032 0.4012 MNVDPKKTASNGQEKMLTSQEQQALINEVRRLIGPLSGKASIYCSDASIARYLRARNWNVKKATKMLKQTLKWREEYKPEEIRWEDVAHEAETGKIYRTNYIDKHGRTVLVMRPGRQNSKSTKGQIKYLVYCMENAILNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAVLYNAPKFFEPFFMMVKPLLEPKTYNKVKFGYSDDQNTKKIMEDLFDIDHLESAFGGNDDTGFDINKYAERMREDDKKIPSFWTRENSPSSVPNNVPSLDSIRLDSNSDASDNEKLDSSPDPKMDTGIINPEENISVNEGGKNAIEDMHLNEKLDTSGL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0916 343 Pfam CRAL/TRIO domain 92 241 IPR001251 -
Apr9g0916 343 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Apr9g0916 343 MobiDBLite consensus disorder prediction 1 20 - -
Apr9g0916 343 MobiDBLite consensus disorder prediction 291 305 - -
Apr9g0916 343 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Apr9g0916 343 CDD SEC14 92 242 IPR001251 -
Apr9g0916 343 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 304 - -
Apr9g0916 343 PANTHER GH16843P 1 304 - -
Apr9g0916 343 Gene3D - 2 271 IPR036865 -
Apr9g0916 343 MobiDBLite consensus disorder prediction 263 343 - -
Apr9g0916 343 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Apr9g0916 343 SMART sec14_4 90 244 IPR001251 -
Apr9g0916 343 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Apr9g0916 343 MobiDBLite consensus disorder prediction 329 343 - -
Apr9g0916 343 MobiDBLite consensus disorder prediction 267 290 - -
Apr9g0916 343 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0916 Apr-Chr9 17598493 17604124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0916 49 212 Acyl Lipid Metabolism Gene Families AT5G47730 26.923 2.46e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0916 - - gmx:100780151 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0916 9 17598493 17604124 Apr9g0916 9 17598493 17604124 ECH