Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0905 ATGGCGATTAGTCTTCTTCTTTGGCTGCTGCTGGCCAAGGGTCTTGCGTTGGAGGGTGTAGTTGGTGCCACATTTTCTTCTAGGCTTGTTCACCGCTTCTCTGAGGAGGCCAAGGCTCATTTGGCTTCAAGGACCAACGGTTCTGTGCTTCAAAGTTGGCCTAAGAGGAACAGTTCTGAGTATTTCAGGTTTCTTTTTAGCAGTGACATGACACGGCAGAGGATGAAGCTTGGTTCACAGTATGAGTCTTTGTACTCTTCTGAAGGAAGCCAGACCTTCTACTTTGGAAATGCGTTTGGTTGGTTGCATTACACGTGGATTGATGTAGGAACTCCAAATGTTTCATTTCTTGTTGCGTTGGATGCTGGAAGTGATCTGCTTTGGGTTCCCTGTGACTGCATTGAATGTGCTTCCTTGTCACCCGGACATTACAATGTGCTTGATAGGGATCTTAATCAGTATAGACCATCATTGTCCAGTACCAGCAGACATTTACCTTGCGGTCATCAGTTGTGCAATCTAAGTTCCCTTTGCAAAGGTTCTAAGGATCCATGCCCTTATATTGTTCAGTATGTCTCAGATAATACCTCAACTTCTGGATATCTTATTGAGGACAAACTACATTTGGCTTCCTATGGCAGACATGGAGAACAAAATTCTGTGGAAGCCTCTATCATTTTAGGTTGTGGAAGGAAGCAAACTGGTGACTATTTAGAAGGAGTTGCTCCTGATGGTGTTTTAGGGCTAGGACCGGGAAGCCTTTCTGTCCCAAGTTTGTTAGCAAAGGCTGGAATTATTCGGAATTCCTTTTCAATTTGTTTGAATGAGAATGAATCTGGGAGAATTCTCTTTGGCGATCAAGGGCATGTTACCCAACATTCTACACCATTCTTGGTTGCGGATGGGGATTTTATTGGCTATTTTGTTGGAGTAGAAAGCTTGTGTGTTGGGAGTTTATGTTTCAAGGAAGCCAGGTTGCAAGCACTTATTGACAGTGGAACCTCTTTCACATATCTTCCAGATAAAGTTTATGAAAAAGTTGTAGCAGAGTTTGACAAACAAGTAAATGCAACCAGGATTAGTCTCCAACAATTCCCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTAATTAACACTCCCCCTTTGAAGCTCACTTTCTCTAGGAATCAAACATTTTCAATTCAAAATCCAATATTGACTTATTCTGAAAGTCAGGAATACACCATCTTTTGTTTGACTGTAATCCAGTCTGAAGATGACTATTGTACCATTGGACAAAATTTCCTTATAGGATATCGCACAGTCTTTGATTGGGAGAATCTACGGTTTGGCTGGTCTAGATCAAATTGTCAAGATAGCACAGGAGATAGAGCAAATTTCTCATCATCTGGTGGTGGATCAACAAATCCTTTACCAGCCAATCAGCAGCAGAGTTTCCCTAACAGTCGTAGCGTGCCACCCGCCGTCGCCGGACATGCATCCTCCAAATCCTCTGCAGCCACACCTGGACATTCCTCTAGGCATTCCTTGATTTCATTGTTAATGATATGTGTCACTGTTGGCTTTGGTTATCTTGTTTTGTGTATCTGA 1596 0.4267 MAISLLLWLLLAKGLALEGVVGATFSSRLVHRFSEEAKAHLASRTNGSVLQSWPKRNSSEYFRFLFSSDMTRQRMKLGSQYESLYSSEGSQTFYFGNAFGWLHYTWIDVGTPNVSFLVALDAGSDLLWVPCDCIECASLSPGHYNVLDRDLNQYRPSLSSTSRHLPCGHQLCNLSSLCKGSKDPCPYIVQYVSDNTSTSGYLIEDKLHLASYGRHGEQNSVEASIILGCGRKQTGDYLEGVAPDGVLGLGPGSLSVPSLLAKAGIIRNSFSICLNENESGRILFGDQGHVTQHSTPFLVADGDFIGYFVGVESLCVGSLCFKEARLQALIDSGTSFTYLPDKVYEKVVAEFDKQVNATRISLQQFPWEYCYNASSQELINTPPLKLTFSRNQTFSIQNPILTYSESQEYTIFCLTVIQSEDDYCTIGQNFLIGYRTVFDWENLRFGWSRSNCQDSTGDRANFSSSGGGSTNPLPANQQQSFPNSRSVPPAVAGHASSKSSAATPGHSSRHSLISLLMICVTVGFGYLVLCI* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0905 531 SUPERFAMILY Acid proteases 97 455 IPR021109 -
Apr9g0905 531 Gene3D Acid Proteases 87 286 IPR021109 -
Apr9g0905 531 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
Apr9g0905 531 ProSiteProfiles Peptidase family A1 domain profile. 103 448 IPR033121 -
Apr9g0905 531 PANTHER ASPARTYL PROTEASES 5 475 IPR001461 GO:0004190|GO:0006508
Apr9g0905 531 CDD pepsin_like 94 449 IPR034164 -
Apr9g0905 531 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Apr9g0905 531 Gene3D Acid Proteases 288 458 IPR021109 -
Apr9g0905 531 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Apr9g0905 531 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Apr9g0905 531 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Apr9g0905 531 MobiDBLite consensus disorder prediction 455 505 - -
Apr9g0905 531 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 475 - -
Apr9g0905 531 Pfam Xylanase inhibitor C-terminal 323 448 IPR032799 -
Apr9g0905 531 MobiDBLite consensus disorder prediction 455 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0905 Apr-Chr9 17403194 17409122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0905 84 453 Miscellaneous Gene Families AT1G44130 25.377 4.49e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0905 - - lang:109359439 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0905 9 17403194 17409122 Apr9g0905 9 17403194 17409122 ECH