Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0385 ATGTCGTCAAGCAGAAACCCATGTTTCGTGGAAAACGATTATAGTACCTCGTTGCTTTGGTCGTTCCAACGACAACGTTGTCCTGGAGATGGAGAGACGTCTCAGAATCGTTATCAAAACCCAATTCTCACGAATCAAACCCTAGAAGACGCTTTCTCTCGTCTCTCTGTGATGCCTAACAATCACTCAACGTTGGGTTTCGTTGGCGAAGGATCGAGTCACATTGACACCACAAAACCTTTCACTTTTCAGGGGCAAGAAACATACCCTTCTAATTATCATTGTTCCAGAATTGGCCAAATGCATAGTTTTGGTAATGGTAGGTACAGTGGAGGCGATAATACACCTGTTTTGGCAACGACATGGCATAATTGCTATGTGGGGTATAATAATGATACTGATCGATATAACGGTGGCTATCACAACTTGCGATCACAGGCTTATAACACTTTTTTGAAAGAAGAATCTCAGAACAATTTTTTAAGGTTGCCATTGTCAAACGATGATCAGTTTAGTCTCAGTTTCCAAGGATCTCGTAGTAGCTCAATGAGTACTGGGTTATTGAGTAACACGCTGGATAATGTCAATAGTTGGCGTTACCGTTTGTTGCAGAATCCTTTGACTCAGCATTCTGTTTATGATTTTCAGGGAAAGATTTTGTTGTTAGCTAAGGATCAATTGGGGTGTCGGGTTTTGCAAGAAACGATGAAAAGCTTGAAATCTCAGGAAGAGGTTTCTTTGGTTTTTCTAGAACTGATAGATCACGTGATTGAGTTGATGTTGGACTCGTCCGGGAATTATGTTTTTCAGAAACTCGTGGAAATATGCACTGAAGAACAGAGGACTCACATAATTTTGATGCTGACCAAGACTAATTTTCAGCTTGTCAATATCTGTTTGGATGCTCATGGGACCCGGGCTGTGCAGAAATTATTTGAACATGTGACCACCCAAGAACAACGAAATCTTATCATGCTAGCGTTGTACCCCGGTGTTGTTGCATTGACTAAGGATACGAACGGTCTTCATGTCATTGAGAATTGTCTAAAACATTTCTCACTTGAAGATAACAAGTATATTCTGAACATCATGGCAAACAACTGTGTTGACATTGCAACGGACAAGAACGGATGTTGTGTAATGCAGCGTTGTGTTGAGCGTGTTCACGGCGAATCCAAAGAGCGGTTAATGGCCGAGATCATTTTAAATGCTTTCCTTTTAGCAGAAAACTGTTACGGCAACTACGTGGTGCAACATCTAGTGACTCAGAAAATACCTAGAGTTATAGAAGGACTAATGAGACAGCTTGAAAATAATTTTTTTACACTGTCTTACAATAAATATGGCAGCAATGTTGTGGAGAAGTTCTTGCAAGTGGCTGGAGAAGAGCATTCTAAACGTATTGTGGTGGAGTTGCTCTGCGATCCAAATGTTTCAATTCTACTAGTGGACCCATATGGAAATTATGTCATTAAGTCAGCACTCCATGTCTCCAAGGGTGCCATTCGGAATGCCTTACTTCAACTTGTTGAAGATCACTATGCTTTGATGCAAAGCAACCTCTATGGCCAAAAACTACTTGCTTGGGTTGACAAATGGAAGCATCGTAAATTGACTAAAGCAACGTCACTGTTTTTTGTTGTGGATGTTGATGTTTAG 1659 0.4069 MSSSRNPCFVENDYSTSLLWSFQRQRCPGDGETSQNRYQNPILTNQTLEDAFSRLSVMPNNHSTLGFVGEGSSHIDTTKPFTFQGQETYPSNYHCSRIGQMHSFGNGRYSGGDNTPVLATTWHNCYVGYNNDTDRYNGGYHNLRSQAYNTFLKEESQNNFLRLPLSNDDQFSLSFQGSRSSSMSTGLLSNTLDNVNSWRYRLLQNPLTQHSVYDFQGKILLLAKDQLGCRVLQETMKSLKSQEEVSLVFLELIDHVIELMLDSSGNYVFQKLVEICTEEQRTHIILMLTKTNFQLVNICLDAHGTRAVQKLFEHVTTQEQRNLIMLALYPGVVALTKDTNGLHVIENCLKHFSLEDNKYILNIMANNCVDIATDKNGCCVMQRCVERVHGESKERLMAEIILNAFLLAENCYGNYVVQHLVTQKIPRVIEGLMRQLENNFFTLSYNKYGSNVVEKFLQVAGEEHSKRIVVELLCDPNVSILLVDPYGNYVIKSALHVSKGAIRNALLQLVEDHYALMQSNLYGQKLLAWVDKWKHRKLTKATSLFFVVDVDV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0385 552 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 103 530 - -
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 472 508 IPR001313 GO:0003723
Apr9g0385 552 Gene3D - 200 540 IPR011989 -
Apr9g0385 552 PANTHER PUMILIO HOMOLOG 15 103 530 - -
Apr9g0385 552 SUPERFAMILY ARM repeat 212 531 IPR016024 -
Apr9g0385 552 SMART pum_5 363 398 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 214 250 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 327 362 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 473 508 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 399 434 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 251 286 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 290 326 IPR001313 GO:0003723
Apr9g0385 552 SMART pum_5 435 470 IPR001313 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 251 286 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 219 253 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 255 285 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 367 401 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 439 473 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 294 325 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 483 507 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 332 361 IPR001313 GO:0003723
Apr9g0385 552 Pfam Pumilio-family RNA binding repeat 406 421 IPR001313 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 290 325 IPR001313 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 187 534 IPR033133 GO:0003723
Apr9g0385 552 CDD Pumilio 217 528 IPR033712 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 435 471 IPR001313 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 214 249 IPR001313 GO:0003723
Apr9g0385 552 ProSiteProfiles Pumilio RNA-binding repeat profile. 362 398 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0385 Apr-Chr9 5185582 5189075 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0385 - - aprc:113874129 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0385 9 5185582 5189075 Apr9g0385 9 5185582 5189075 ECH