Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0327 ATGAGTGAGTATTTTCTTTGTTGGCTACAGATGTATAATCATGTATGCAATAATAGTAGCTGCTCGCGGTTCTTGTTTGTAGTGAGGCACTTCTCTAGAATTCGTCCCCCAAGGCCCGTTTCTGTTAAACCAGTAATCAGAGTATCTAACAATATTTCCCGCTTGGATGCTCCCAAAGAAGGTCCAAAACCCAGACAGCAACTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGGCAAGAACTTAGTTAGTTATCCTGGACAGCATGATCACATTACTGCTGTCAATTGGATTAAGTATTATTTCAAGGTCGCATGGGGTTCTGTCATTGAGTCCCATTTCAGGGAGGGTCTTGTACAAATGGAGGACCTTGTTGATGATGACACTTCCACTCAGAAGGAAGAGCTAATAAAACCTATGCGGAAGATTAGGCCTAATGAAGTGATGAAACGAGGTGCCAGAGTTCATGTTCCTGTATCAATTGCTGAGAGTAGGATTTCCAAAAGATATGATGCTATTCCAAGTGGAACACTATATCCAAATGCTGACGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCAGCTATTATTGTGCTAAATAAACCTCCAAAATTGCCGGTTAAGGGGAATCTGCCAGTTCATAATAGCATGGATGCATTGGCAGCTGCAGCACTGTCTTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAGAGAGAGCAGTGGCATCCTTATACTGGGGAGAACCAAAGATAGTATATCTCACCTCCAATGGCTGTTCAGTAACATTAATAATGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACATATCAGCGGTATTGGGCATTAGTCATTGGAACTCCCACGGTTAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTCTGAATGATGGGAAGACTGAGAGGGTAATTCTAGCTCACCATTCAAGTGTAGAACCTCGCCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAAAGATAAATGGATGCTCATGGGTTGAGCTGCATCCACTTACTTACCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACCCCAATAGTGGGTGACTATAAGTATGGCTGGTTTGTGCACAGCCGATGGAAACAAATGGCACGAGTGGATATTGAGCCAACAACTGGAAAACCATACAAGATGCGGAGGCCAGAAGGCCTAGATGTTCAAAAGGGAAGCGTTTTATCAAAGGTTCCTCTATTGCATCTTCACTGCAGAGAACTTGTACTTCCCAACATTGCTAAATTTCTGCATGTTTTGAAAAATAGTTCAGAAGAACTGCACACTTCACTTAGCGAGCAACCTGATGTTCTTCGCTTTGTGGCAACAATGCCTTCTCATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTGTGA 1470 0.4299 MSEYFLCWLQMYNHVCNNSSCSRFLFVVRHFSRIRPPRPVSVKPVIRVSNNISRLDAPKEGPKPRQQLSLPPFPGHPLPGKNLVSYPGQHDHITAVNWIKYYFKVAWGSVIESHFREGLVQMEDLVDDDTSTQKEELIKPMRKIRPNEVMKRGARVHVPVSIAESRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILILGRTKDSISHLQWLFSNINNAKSSCKAWNDACEATYQRYWALVIGTPTVKEGIIHAPLSKVLLNDGKTERVILAHHSSVEPRQEAVTEYRVLGPKINGCSWVELHPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMARVDIEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLKNSSEELHTSLSEQPDVLRFVATMPSHMRISWNLMSSYLV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0327 489 SUPERFAMILY Pseudouridine synthase 185 442 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr9g0327 489 MobiDBLite consensus disorder prediction 53 72 - -
Apr9g0327 489 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 23 486 - -
Apr9g0327 489 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 23 486 - -
Apr9g0327 489 CDD PseudoU_synth_RluA_like 200 385 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr9g0327 489 Pfam RNA pseudouridylate synthase 200 371 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr9g0327 489 Gene3D Pseudouridine synthase 184 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0327 Apr-Chr9 4340998 4355292 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0327 - - pvu:PHAVU_001G032500g 867.84