Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0296 ATGGCTTTGAGGCTTATGATTTCGCAGGCTGCAAGGCGTCAATCAGAATTTGGACAGATAAAAAATTTGTTGGTTAGAAGCTATTTTTCTGTCAACAAGTTTGGGGATCGCATAGGGAATAGGCTTTTGTATGCCCAGGAGAGATTTCAGTCTAGCTACATTGGCAACTTAGCTCGTCGAGTGCGTGATGTAGATGAAGCCAGTGAAGTTGCATATCTCAAGGAACTATACCGACAGAATGATCCTGAAGCGGTGATTAGAGTATTTGAAAGCCAGCCATCTCTGCATACTATTCCTTCAGCTCTTTCTGAATACATAAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTGAATTACTGAAGACATTAAAGAGAGGTATTTCCAATTCAATGAAGGAGGAAGAAAGTATAGCTGGTCTTTCTGCTTTTAGAAATGTGGGAAATTCAACCAAAGACCAAACTCTTGGAACTACTAATAATCCAATCCATATGGTGGCTACAGAAGGTGGGAATTTAAAAGATCAGCTATGGCGAGCAATTAGGTCCATTGCAGTGGTTTTCTTCTTGATTTCTGGTGTAGGAGCACTAATTGAAGATAAGGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCGACCGAGTATGGAGTCAAATACAAAATTTAATGATGTAAAAGGGGTTGACGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCACTACCTCCGAGATCCCAAGCGCTTTACTCGTCTTGGTGGTAAGCTCCCTAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACTGGAAAAACAATGCTAGCAAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGAGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCAGCAAAGAAGCGGTCACCTTCTATAATATTCATCGATGAGATAGATGCTATTGGAGGAAGCCGAAATCAGAAGGATCATATGTACATGAAGATGACATTAAACCAGCTATTGGTTGAACTGGATGGATTCAAACAAAATGAGGGCATAATTGTGATTGCTGCTACTAATTTTCCAGAGTCATTGGATAAAGCATTGGTGAGACCTGGGCGATTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGACGGCAGATCTTGGAATCGCACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATTTAATGATCATTGCTCGAGGAACGCCAGGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAACATTGCTGCTCTCAAGGCAGCAATGGATGGTGCTAAAGCTGTGAACATGGCTGATTTAGAACATGCAAAGGACAAGATTCTGATGGGGAGCGAACGGAAATCAGCTGTCATATCTGAAGAGTCACGAAAGTTGACTGCGTTCCATGAGGGTGGCCATGCGATCGTGGCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACTATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTTCTCAATTGCCTGACAAAGACGAAACCAGCGTCTCCCGTAAACAGATGCTTGCCCGGCTCGATGTTTGCATGGGAGGCCGGGTTGCCGAAGAACTAATTTTTGGAGAAAATGAAATTACTTCTGGTGCATCCTCAGATCTTAAGAAGGCAACAAATCTGGCAAGGGAAATGGTTACCAAATATGGTATGGGTAATGAAGTTGGTCTAGTCACTCATGATTACGATGATGACGGGAGAAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCTTACAACAATGCCAAAACTATTCTAACTACTCACAACAAGGAACTTCATGCACTTGCAAATGCTCTTCTTGAGCACGAGACACTTACAGGAAGTCAGATAAAGGCATTACTTGCCCAAGTTAGATCCCAGAAACAGCAGCAGACACAAACAGTTGAAGCTCAGAGCAGTTCACAATCTAACACAGTGCCTCCATCATCCAGTCACCCAGCAGCCTCCGCCGCTGCAGCTGCTGCTGCTGCCGCTGCCACAGCTGCAGCTACTGCAGCTGCCTCCAAGGCTAAAAGTGCTCATGTGGGGTCTTAG 2148 0.4446 MALRLMISQAARRQSEFGQIKNLLVRSYFSVNKFGDRIGNRLLYAQERFQSSYIGNLARRVRDVDEASEVAYLKELYRQNDPEAVIRVFESQPSLHTIPSALSEYIKALVKVDRLDESELLKTLKRGISNSMKEEESIAGLSAFRNVGNSTKDQTLGTTNNPIHMVATEGGNLKDQLWRAIRSIAVVFFLISGVGALIEDKGISKGLGINEEVRPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAAKKRSPSIIFIDEIDAIGGSRNQKDHMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVNMADLEHAKDKILMGSERKSAVISEESRKLTAFHEGGHAIVAIHTDGALPVHKATIVPRGMALGMVSQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGENEITSGASSDLKKATNLAREMVTKYGMGNEVGLVTHDYDDDGRSMSSETRLLIEKEVKQFLERAYNNAKTILTTHNKELHALANALLEHETLTGSQIKALLAQVRSQKQQQTQTVEAQSSSQSNTVPPSSSHPAASAAAAAAAAAATAAATAAASKAKSAHVGS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0296 715 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 8 686 - -
Apr9g0296 715 MobiDBLite consensus disorder prediction 662 687 - -
Apr9g0296 715 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Apr9g0296 715 Pfam AAA+ lid domain 412 455 IPR041569 -
Apr9g0296 715 Gene3D - 391 464 - -
Apr9g0296 715 CDD AAA 257 389 - -
Apr9g0296 715 SMART AAA_5 256 392 IPR003593 -
Apr9g0296 715 Pfam Peptidase family M41 471 650 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr9g0296 715 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 215 652 IPR005936 GO:0004176|GO:0004222|GO:0016020
Apr9g0296 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 484 IPR027417 -
Apr9g0296 715 PANTHER METALLOPROTEASE M41 FTSH 8 686 - -
Apr9g0296 715 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 682 IPR005936 GO:0004176|GO:0004222|GO:0016020
Apr9g0296 715 Pfam ATPase family associated with various cellular activities (AAA) 260 389 IPR003959 GO:0005524|GO:0016887
Apr9g0296 715 Gene3D - 208 390 IPR027417 -
Apr9g0296 715 SUPERFAMILY FtsH protease domain-like 471 655 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr9g0296 715 Gene3D Peptidase M41 465 664 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr9g0296 715 MobiDBLite consensus disorder prediction 662 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0296 Apr-Chr9 3865281 3877317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0296 65 652 Miscellaneous Gene Families AT5G53170 53.160 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0296 K08955 - gmx:100776957 1100.12