Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0217 ATGTTTCAGAGAAACCCTTCCTACACAAACCCAGGACCCTGTCAACACCTTGCTGATTACAAGCTCAAGCATGGCTTCAATGGCTATAAAGCCGTACAAAAGCTTCTTGTGACCTCTCCAATTGGGAGAACCAGTGTGAAGAAACCCAACGCAAAGATAGCCAGATGCAGTTTCTGTAATGGGTGTGAAGGGAGGTTCTATTTGTGCCTGATTTGCTCTTCATTCTCATGTTTGGATCATACCCTTTTGCACCCTCAATCAGAAACTGGTCATGCTGTGTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGTTGTGCTGTGATCAATTGTATGACCCTGATTTTGATCAAGTTGTGATGTCTAAGCACTCAATGGGTGCCACTGGGAATGAGAGCATTGGCCAGAGGTTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGTTGGATTGGATTTGGACAAAAAATATAAGTGCACAGTTTCAACCAAAGATCTGAGGGCTAAATCATGTTATCCTATGGGATTGAGGGGTTTGAACAATTTGGGTAGCACATGTTTCATGAATTCTGTGCTGCAAGCATTGCTTCATGCACCTCTTTTCCGGGACTATTTCTTGAGTGGTGGACACTGTTTGGAGGCTTGTCATCAGAAGAGAACCATGGATCGGATGTGTTTGCTTTGTGATATCAATGCTGTTTTTTCAGCCGTGTATTCTGGTGATCAAAATCCATATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCACATTTAGCAAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCAGTACATGAGAAAGAGGGTGAAACAAGGAACCGAAGCAAAGGTAATGGAGATTGTCAATGCATTGCTCATAGGGTGTTCTACGGGCTATTGAGATCAGATGTTACCTGCATGGCCTGTGGATATACCTCAACAACCCATGATCCCTGTGTGGACATTTCACTTAACTTGGACACCAATGTTTCTTCAACAGAAAAGGGTAAAAAACTTACCAAACAGAATGAGGATGGTAATGTATCTACCCTTTCTGGTTGTTTAGATTTGTTCACAAGACCAGAGAAGTTGGGGTCAGACCAGAAACTTTTTTGCCACAATTGCCAAGAAAGGCAGGACTCATTGAAGCAAATGTCTATTAGAAAGCTTCCATTAGTACTTAGTTTGCATGTAAAGCGATTTGAGCACTCTTTTGTTAAAAAGTGTTCTAGAAAAATAGATCGCTTTGTACACTTTCCATTTTCCTTAAACATGACTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTATACTTTTGGGGGTGATGAATCAGATATGTTTTCTGAGTTTGAGATTTTTGCAGTGGTAACACATTCAGGGACACTTGAGTCTGGCCATTATGTTTCTTTTGTGCGTTTAAGGAATCATTGGTACAAATGTGATGATGCTTGGGTAACCGAGGTTGATGAGGCGACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGTGCAGAAAACTTTGTACAATAAAGCAAATGAAGATCTTAGTCACCTGCCAAATTCCCTTGAAAGAGAGCTATTTCTTCCTACTGCTGGCTGTAGCAATAGAGGAGGATGTTAA 1668 0.4155 MFQRNPSYTNPGPCQHLADYKLKHGFNGYKAVQKLLVTSPIGRTSVKKPNAKIARCSFCNGCEGRFYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELYCGLCCDQLYDPDFDQVVMSKHSMGATGNESIGQRLIKRRRLVSGVVGLDLDKKYKCTVSTKDLRAKSCYPMGLRGLNNLGSTCFMNSVLQALLHAPLFRDYFLSGGHCLEACHQKRTMDRMCLLCDINAVFSAVYSGDQNPYSPAQFLYSWWQHSAHLASYEQQDAHEFFISMLDAVHEKEGETRNRSKGNGDCQCIAHRVFYGLLRSDVTCMACGYTSTTHDPCVDISLNLDTNVSSTEKGKKLTKQNEDGNVSTLSGCLDLFTRPEKLGSDQKLFCHNCQERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKCSRKIDRFVHFPFSLNMTPYLSSSILRARYGNRIYTFGGDESDMFSEFEIFAVVTHSGTLESGHYVSFVRLRNHWYKCDDAWVTEVDEATVRASQCYMIFYVQKTLYNKANEDLSHLPNSLERELFLPTAGCSNRGGC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0217 555 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Apr9g0217 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 131 IPR013083 -
Apr9g0217 555 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 545 - -
Apr9g0217 555 Gene3D Cysteine proteinases 171 526 - -
Apr9g0217 555 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 545 - -
Apr9g0217 555 Pfam Ubiquitin carboxyl-terminal hydrolase 178 518 IPR001394 GO:0004843|GO:0016579
Apr9g0217 555 SUPERFAMILY RING/U-box 13 118 - -
Apr9g0217 555 SUPERFAMILY Cysteine proteinases 173 520 IPR038765 -
Apr9g0217 555 ProSiteProfiles Zinc finger UBP-type profile. 36 130 IPR001607 GO:0008270
Apr9g0217 555 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Apr9g0217 555 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 521 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0217 Apr-Chr9 2839525 2842736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0217 178 518 Miscellaneous Gene Families AT2G24640 28.653 1.00e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0217 K11366 - gmx:100806347 1013.06