Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0170 ATGCAATTAACCAAGCTATCATCTGCAATCACTATCCCATGGCTCCAACTTCCTCCAGACACCACGAAACGACGTGTGGCAGAACAAACATGCTTGGCTCTTCTTCACTCCTGCAACAATCTCACCAATCTCACCCAAATCCACGCGCTCATTCTCAAACTCGGTCTCCAAAACAACCCTCTCGTCCTCACCAAGTTCGCTTCCACCTCCTCACACTTCCACGCCATTCACTACGCTTCCACCTTCCTCTTCCCAAATGACCAAGCTACCCCTCTCCCCTTCCACGACACCGTCCTCTTCAACACCCTCATCAGAGCCTTCGCTCAAACCAACGACTCAAAGTTAAACGCTTTACGTTACTACAAAACAATGCTCCGTTACGGCGTTTTGCCTAATAAATTCACTTACCCTTTTGTTCTCAAGGCCTGTGCTGGCCTTGGGAATACTCCGTTAGGGAAAACGGTTCATGGGTCGGTGGTAAAGTTCGGTTTTGAGGATGATCTTCACGTGCAGAACACCATGGTTCACATGTATTGTTGTTGTGAAGAGGGGGTTGAATTTGCTAGGAAGGTGTTTGATGGAAGTACTAAGACGGATTCGGTGACGTGGACTGCTATGATTGGAGGGTACGCACGTGTGGGGGATTCTGCACGTGCCGTTGGGTTGTTTAGGGAAATGCAGGTTGTGGGGGTGTGTCCTGATGAGATCACCATGGTTTCAGTTTTAACTGCATGTGCTGATTTGGGTGCACTTGAGTTGGGGAAGTGGTTGGAGTCTTATGTTGAGAGGAAGAATGTGACAAAGTCTGTGGAGCTTTGTAATGCAATGATTGACATGTTTGCAAAGTGTGGTGATGTTGATAGGGCTGTGAAATTGTTCAGAGAAATGGAAATGAGGACCATTGTTTCGTGGACTTCGGTGATTATTGGTTTGGCGATGCACGGTCGTGGATTAGAGGCTGTTTTGTTGTTTGATGAGATGGTTGAGCAAGGGGTGGTGCCTGATGATGTTTCCTTCATAGGTGTGCTATCTGCTTGTAGTCACTCAGGATTAGTTGATAAGGGGCGATACTATTTCGATTTGATGGAGAAGAGTTTTGGCATTGTGCCTAAGATTGAACACTATGGATGTGTGGTTGATATGTTGAGTAGAGCAGGGCTTGTGAATGAGGCGTTGGAGTTTGTTCGAACGATGCCTGTTGAGCCAAACCAAATCATATGGAGAAGCATAATTGTTGCTTGCCATGCTCGCGGCGAACTCAAGCTGGGTGAGAGCATCTCGAAGGAGCTAATAAAAAAGGAGCCAATGCATGAGTCTAACTATGTGCTGCTTTCAAACATTTATGCGAAATTGCTGCGCTGGGAGAAGAAGACTAAGGTTAGGGAGATGATGGATGTTAAAGGGATGAAGAAGATTCCAGGGAGTACCATGATTGAGATAAACAGTGAAATGTATGAGTTTGTTGCAGGTGATAAGTCACATGATCAGCACAAAGAGATATATGAAATGGTGGATGAGATGGGAAGGGAAATAAAGAGGGCAGGGTATGTGCCTACAACATCTCAGGTATTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAGACATAGTGAAAAGCTTGCCATAGCTTTTGCTCTTTTGAGTACTCCCCCTGGCACATCTATTAGAATTGTGAAGAACTTGCGCGTTTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGCTTGTGCTCCTGCGGAGATTTCTGGTAG 1824 0.4545 MQLTKLSSAITIPWLQLPPDTTKRRVAEQTCLALLHSCNNLTNLTQIHALILKLGLQNNPLVLTKFASTSSHFHAIHYASTFLFPNDQATPLPFHDTVLFNTLIRAFAQTNDSKLNALRYYKTMLRYGVLPNKFTYPFVLKACAGLGNTPLGKTVHGSVVKFGFEDDLHVQNTMVHMYCCCEEGVEFARKVFDGSTKTDSVTWTAMIGGYARVGDSARAVGLFREMQVVGVCPDEITMVSVLTACADLGALELGKWLESYVERKNVTKSVELCNAMIDMFAKCGDVDRAVKLFREMEMRTIVSWTSVIIGLAMHGRGLEAVLLFDEMVEQGVVPDDVSFIGVLSACSHSGLVDKGRYYFDLMEKSFGIVPKIEHYGCVVDMLSRAGLVNEALEFVRTMPVEPNQIIWRSIIVACHARGELKLGESISKELIKKEPMHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMKKIPGSTMIEINSEMYEFVAGDKSHDQHKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0170 607 Pfam E motif 419 479 IPR046848 -
Apr9g0170 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 593 - -
Apr9g0170 607 PANTHER - 29 593 - -
Apr9g0170 607 Pfam PPR repeat family 96 144 IPR002885 -
Apr9g0170 607 Pfam PPR repeat family 199 246 IPR002885 -
Apr9g0170 607 Pfam PPR repeat family 300 347 IPR002885 -
Apr9g0170 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Apr9g0170 607 Pfam PPR repeat 273 299 IPR002885 -
Apr9g0170 607 Pfam PPR repeat 374 398 IPR002885 -
Apr9g0170 607 Pfam DYW family of nucleic acid deaminases 515 607 IPR032867 GO:0008270
Apr9g0170 607 Gene3D Tetratricopeptide repeat domain 353 544 IPR011990 GO:0005515
Apr9g0170 607 Gene3D Tetratricopeptide repeat domain 149 251 IPR011990 GO:0005515
Apr9g0170 607 Gene3D Tetratricopeptide repeat domain 93 148 IPR011990 GO:0005515
Apr9g0170 607 Gene3D Tetratricopeptide repeat domain 252 352 IPR011990 GO:0005515
Apr9g0170 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Apr9g0170 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 299 IPR002885 -
Apr9g0170 607 Pfam E+ motif 485 511 IPR046849 -
Apr9g0170 607 TIGRFAM PPR: pentatricopeptide repeat domain 98 132 IPR002885 -
Apr9g0170 607 TIGRFAM PPR: pentatricopeptide repeat domain 338 370 IPR002885 -
Apr9g0170 607 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Apr9g0170 607 TIGRFAM PPR: pentatricopeptide repeat domain 272 298 IPR002885 -
Apr9g0170 607 TIGRFAM PPR: pentatricopeptide repeat domain 201 235 IPR002885 -
Apr9g0170 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 131 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0170 Apr-Chr9 2221821 2223823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0170 30 607 Glycoside Hydrolase AT3G49170 35.034 1.22e-125 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0170 - - gmx:100778415 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0170 9 2221821 2223823 Apr9g0170 9 2221821 2223823 ECH