Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0147 ATGCTCTCTCGCTCTCTCAAACATAGTCACACACTTTTCTTCTCCCTTCGCTTATTGCCGTTTACGCTCACACCAAACTCTATCCCTTCAATTCGGGTCTCACCACACCGTTTCTCTTCTTCTTCGTCGAATTCATGGCTTTCCCTACCCGGAAACCCAATCATCCACTGGCCCTCACTACCCCCAATCACCCAACCGGAACCAAAACCCGCTCCAAACCCGAATCCAAAACCCGACCCTGCTGCTTCGGACCCGAACTTCTCTGCCATTGCCACTCTCTTCACCGACCCTTCCATCACTCCCGGTTCGGTTCTCCACTCCGAACTGGACCGGTCCGGAATCGAACCCGATTCACCTCTCCTTCTCGCCGTGTTCGATCATTTCGACTCGTCCCCCAAGCTGCTGCACTCGTTGTTCCTATGGGCTCAAAAGCGAACCGGGTTCAGGCCCAGCCCAAAACTCTTTGACTCTATGGTCAACGTACTTGGCAAATCGAGAGATTTTGACTCTGCTTGGACCCTCGTTCACGATCACGTCAATGGAAACCAGGAAGAAGGCTTGGTTTCCATTGGTACCTTTACTATCTTGATTCGACGCTATGCTCGTGCAGGTATGCCCAAGCCTGCTATTAGAACGTTTGAGTTTGCTAGAAATAACAAGTCCATTGTGGATTCTGGATCAGAAACAACTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAGGGGTGTGTGAGGGAAGCTTCAGAGTATTTCCATAGGAGAAAGGAGATGGATTTAGATTGGGTTCCGTCAATCCGAGTTTATAATATTATGTTAAATGGATGGTTTCGATCAAGGAAACTCAAGCAGGGTGAGAGACTTTGGACAGCGATGAAGGAGGAGAGTGTGAGACCAAGTGTTGTGACATATGGTACCCTGGTGGAAGGATATTGTAGGATGCGCCGTGTGGAAAAGGCACTTGAAATGGTTGGTGAAATGACCAGGGAAGGAATTGAACCAAATGTAATTGTTTATAACCCAATAATTGATGCACTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTAGGTATGTTGGAGCGTTTTCATGTTTTGGAAATAGGCCCTACTGATTCAACATACAATGCTCTGATAAAAGGGTTTTGTAAGGCGGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGCAGGGGTTTCCTCCCAAGTCCCACCACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAATTGATGAGGGGATGAACCTATATACCAAGATGATTGAATCTGGTTATACTCCAGATCGGCTAACTTACCATCTTCTGGTGAAGATGTTATGTGAAGAGGAGAAGTTGGACTTGGCTGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCGACAAGTACCATGTTAATTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGTGGATTTTGAAGACATGATACGTAGGGGTTTAGTTCCTCAGTATCTCACTTTCCAGAGAATGAATTCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAACTTTGCAAGTTGATGTCTTCTGTTCCCCATTCTACCAACCTGCCAAGTACTACTTATGGTGAAGCCAGAGATGAAGAACACGCACGAAGAAAATCTATACTTCGGAGAGCCAAACAATTTTCTGATATGCTGAAAAACTGTAAGGACCCTAGTGAACTTGATAAGTATAAAAATTTATCACAAAATGTGGTCTCAAGTGCAAACTGTTTGATAGAGGGTAATAATAGAAAATAA 1830 0.4383 MLSRSLKHSHTLFFSLRLLPFTLTPNSIPSIRVSPHRFSSSSSNSWLSLPGNPIIHWPSLPPITQPEPKPAPNPNPKPDPAASDPNFSAIATLFTDPSITPGSVLHSELDRSGIEPDSPLLLAVFDHFDSSPKLLHSLFLWAQKRTGFRPSPKLFDSMVNVLGKSRDFDSAWTLVHDHVNGNQEEGLVSIGTFTILIRRYARAGMPKPAIRTFEFARNNKSIVDSGSETTLFEILMDSLCKEGCVREASEYFHRRKEMDLDWVPSIRVYNIMLNGWFRSRKLKQGERLWTAMKEESVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTREGIEPNVIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNALIKGFCKAGDLVGASKILKMMISRGFLPSPTTYNYFFRYFSRCGKIDEGMNLYTKMIESGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFVDFEDMIRRGLVPQYLTFQRMNSELKRQGMTEMAQKLCKLMSSVPHSTNLPSTTYGEARDEEHARRKSILRRAKQFSDMLKNCKDPSELDKYKNLSQNVVSSANCLIEGNNRK* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Apr9g0147 609 MobiDBLite consensus disorder prediction 58 81 - -
Apr9g0147 609 Pfam PPR repeat family 372 415 IPR002885 -
Apr9g0147 609 Pfam PPR repeat family 299 347 IPR002885 -
Apr9g0147 609 PANTHER LEAF PROTEIN-LIKE 98 604 - -
Apr9g0147 609 Gene3D Tetratricopeptide repeat domain 257 327 IPR011990 GO:0005515
Apr9g0147 609 Gene3D Tetratricopeptide repeat domain 398 470 IPR011990 GO:0005515
Apr9g0147 609 Gene3D Tetratricopeptide repeat domain 471 541 IPR011990 GO:0005515
Apr9g0147 609 Gene3D Tetratricopeptide repeat domain 328 397 IPR011990 GO:0005515
Apr9g0147 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 98 604 - -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 408 440 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 373 405 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 232 259 IPR002885 -
Apr9g0147 609 TIGRFAM PPR: pentatricopeptide repeat domain 480 509 IPR002885 -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Apr9g0147 609 MobiDBLite consensus disorder prediction 58 86 - -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Apr9g0147 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Apr9g0147 609 Gene3D Tetratricopeptide repeat domain 121 256 IPR011990 GO:0005515
Apr9g0147 609 Pfam PPR repeat 234 254 IPR002885 -
Apr9g0147 609 Pfam PPR repeat 478 507 IPR002885 -
Apr9g0147 609 Pfam PPR repeat 268 296 IPR002885 -
Apr9g0147 609 Pfam PPR repeat 192 214 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0147 Apr-Chr9 1740994 1743549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0147 147 551 Miscellaneous Gene Families AT4G11690 25.926 1.03e-44 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0147 - - gmx:100793484 906.746