Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0126 ATGAGTAGACCAACAACTCGAAGTAAAAATAAACGGCAAAAACAAGGGGATGATGGTGTCAGCACTTGTGAAATATGGAGGAAAATTCACAGAACTGGTGCAGTAACTGAGGATGATATGAGCCAACTGTATATGATTTGGAAGCCAGTCTGTTCAGGCTGTCGTGTTAATACCAAAGACAACCCAAATTGCTTTTGTGCATTGGTTCCACCTGCAAATGGAACCCGGAAGTCTGGCTTATGGCAGAAGATTTCTGAATTTGTTGAAAGTCTTGGCCCTGACCCAACGAATGATCTTCGTGCTTCTGTTAGTTCACCTGCAGGTCTGACAAATCTTGGTGCAACGTGCTATGCCAACAGTATACTCCAGTGCTTATATATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAACCAGATGTTTTACAGCAACAACCAGTGTTAGACCAACTGGCTCGGCTTTTTGTACAGTTGTGTGTTAGTAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAGTTAGACAATGGAGTTCAGCAGGACAGCCATGAGTTTCTGACATTGCTTCTATCATTGCTTGAGCGTTGTCTGAGCCATTCCAAAATTGCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGTGGAAGCGTGTCTCATGTGACAACGTGTTCACAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCATGGGGTTAAAAGGTTTAGATGAGAGCCTAGATGATTACCTCACTCTTGAAGAGCTTCGTGGAGACAATCGATATTTTTGTGAGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTTTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGCTATGTCTTCCTTCCACAGACAACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCGGCTGAACTTGATATGCGCCATAGATTGTCTGAGCCTTCTCAGTTTGAAATGATATATGACTTGTCAGCTGTACTGATTCACAAAGGAACTGCTGTTAATAGTGGTCATTACATTGCTCATATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAACTTGGGATGTCATCCATTTGGCGAAGGAGCTGCATGTTCAACTTCTAAATCTGTTAAGACAGATGTACTTCATTCTAATTGCTCTGAACCAATGATAGTTGACTGTAATGGAAATGGTTCGGTTGCCACTCATTCACAATTTTTGCCTGTGGAGACATTTTCATCTAGTGATGCATACATGTTGATGTACCATCTCAAGCATAGAAGAAATGTTGGTGAAAAAGGGGGCATGATTTACGATGCTAACCTTGAAGAAAGAGAGGGCATTGCAGGTACTGCACAAGGCAGCACTTGTATTCCTTCTCATCTTTGTGAAGAGATTCAAAATTTCAATACCTCATATCTTGGTGCTTGTGAGCAGTACAATCATCGGAAAAAGTTAGAATTGAGTCGTATCAATGAGAGGAGACAGGAAGTCCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTGGAGCAGCCCTTTTTTTGGATTTGTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAACTGCTCTCGACAACACATCTATCCAATGTTCACATGGGAAAGTCCCAGTGTCAAAGGTTACCTCAATGAAACGATTGTCTTCTAAAACATGGGATAAGTTATTGTCTAAGTATGGCGGGGGACCAACATTTTCTCATGATGACTGTTGTTGGGATTGTCTGATTGATGGGGCACAGAATGTTGTGTCGGCTGACACCTATCGGGATCAAAGAGATTCATTGAAGCTACTTGCACGTGATATTCTTGATGGAAACTGTGAAGATGGAAAGTACTATGTGTCTAGACCATGGTTGCAGCAATGGTGGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGGGCAACTTATGCCTGAGCAAGCTGCCGGTGCTAAGCGGGTGCTTGTCCCTGAGGGTTTCTGGCTGTTCATTTACAAAGATGCCATTTCTGTGAAACCTGATGATCTTCTGGGCTGCCCTACCTTTCCTTTAGACTCCAGAGTGTGTTCACAATGCAGTAATGAATTATCTGAAGTGGCTTGCTTGGAGGATTCTTTGAGATTAGTAAAACAAAGGCAACGCCAAAATCATGATAAATTATTTGTTGGTAAAAGTATGCAGCTTTCTCTACATTGCAAGTACTTCTTACTTCCTTCTTTGTGGATTTCAAAATGGAGAAATTATGTTAATTTGGCGGTCAAGAATTCAGATAAACCTGAAACTTTAGATGGCATTATTGATTCACTGATGTGTGAAAAGCACTTACGACTTGTTGAAAGGCCTCCTGAACTGATATTCCGACGTGGTGCTATAATCCCAAGAGAATCTTCTGTAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGTTTCTGTGAAGAATGGGGTGGTATTGAGACCAAAGGGATATCTGCCAGAATTGAGAATAATAATGATTTAGAAAATGCTTTGACTGGATCCTGCCAAGAGATGCCGATATGTGATGATCAATTGGACACTTGGGATAAAGTGAATAATGAAAGTGGGAATGGACAAATTGTGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGTATCGGAGAAAAGGAAAGCTGTGAGTTAATGCAGAAACTTAACTATTGCAATGAGGACATATGTTTAATTCTTGTCCGTGGAAAGGAGGTCCCTAGATCAATTTTGGAGGCTTCAAAGGGTTTTGTTGAAACAGAAAGGCGGGTTTCTAAACGTTCCCGGAAAACTAAAAATGGGAATTCAATTAGTCTAAAAGTTTCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACAAAAGGGTGATAAAACAATTGATAATAAAACAATTGATATTGGTGACGAATATGCTACGCTTGCGGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGGGACTCTGAGATCCATGAAAATAGAGATATTGCGGATGAGCTTTGTGACGAGCAAATGGATACTCAGCATACCGAGGCAGGGTTTCGTGGAACACTTTTAACATCAAATGTTTCATCTCAGGTGGTTTAG 3267 0.4062 MSRPTTRSKNKRQKQGDDGVSTCEIWRKIHRTGAVTEDDMSQLYMIWKPVCSGCRVNTKDNPNCFCALVPPANGTRKSGLWQKISEFVESLGPDPTNDLRASVSSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDVLQQQPVLDQLARLFVQLCVSKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKIAKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVMGLKGLDESLDDYLTLEELRGDNRYFCESCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQTTTKKKITSAFSFPAELDMRHRLSEPSQFEMIYDLSAVLIHKGTAVNSGHYIAHIKDENTGQWWEFDDEHVTNLGCHPFGEGAACSTSKSVKTDVLHSNCSEPMIVDCNGNGSVATHSQFLPVETFSSSDAYMLMYHLKHRRNVGEKGGMIYDANLEEREGIAGTAQGSTCIPSHLCEEIQNFNTSYLGACEQYNHRKKLELSRINERRQEVRSVLAEAPVQPLEQPFFWICSDWLRQWADNIIPTALDNTSIQCSHGKVPVSKVTSMKRLSSKTWDKLLSKYGGGPTFSHDDCCWDCLIDGAQNVVSADTYRDQRDSLKLLARDILDGNCEDGKYYVSRPWLQQWWKRKVVDAPSEADAGPTAAISCPHGQLMPEQAAGAKRVLVPEGFWLFIYKDAISVKPDDLLGCPTFPLDSRVCSQCSNELSEVACLEDSLRLVKQRQRQNHDKLFVGKSMQLSLHCKYFLLPSLWISKWRNYVNLAVKNSDKPETLDGIIDSLMCEKHLRLVERPPELIFRRGAIIPRESSVGGLTIISENDWKCFCEEWGGIETKGISARIENNNDLENALTGSCQEMPICDDQLDTWDKVNNESGNGQIVIKTCPEVCESCIGEKESCELMQKLNYCNEDICLILVRGKEVPRSILEASKGFVETERRVSKRSRKTKNGNSISLKVSASTSIYQLKMMIWESFGVVKENQILQKGDKTIDNKTIDIGDEYATLADVNIFAGDQIIVRDSEIHENRDIADELCDEQMDTQHTEAGFRGTLLTSNVSSQVV* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0126 1088 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Apr9g0126 1088 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Apr9g0126 1088 SMART dusp 532 603 IPR006615 GO:0004843
Apr9g0126 1088 Gene3D - 972 1048 - -
Apr9g0126 1088 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1001 - -
Apr9g0126 1088 Gene3D Cysteine proteinases 94 450 - -
Apr9g0126 1088 ProSiteProfiles DUSP domain profile. 621 723 IPR006615 GO:0004843
Apr9g0126 1088 CDD Ubl_USP48 973 1081 IPR044743 GO:0004197|GO:0004843|GO:0016579
Apr9g0126 1088 SUPERFAMILY DUSP-like 517 604 IPR035927 -
Apr9g0126 1088 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Apr9g0126 1088 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Apr9g0126 1088 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Apr9g0126 1088 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Apr9g0126 1088 SUPERFAMILY Cysteine proteinases 106 447 IPR038765 -
Apr9g0126 1088 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1001 - -
Apr9g0126 1088 SUPERFAMILY Ubiquitin-like 976 1047 IPR029071 -
Apr9g0126 1088 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0126 Apr-Chr9 1495220 1506178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0126 105 385 Miscellaneous Gene Families AT4G31670 29.139 2.13e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0126 - - gmx:100795556 1951.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0126 9 1495220 1506178 Apr9g0126 9 1495220 1506178 ECH