Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0117 ATGGCCACAACATTCCACCTCTCTGTTAGTTTCAATCTTCACAAAGGTACAAAATGCAAGTACACGCCTCAATCAGTGAGAGCACTTCCTATACGAATTTTTTCAGTGGGAAAGAAGCGATCACGCGGACTACAACTCCTGGTTGATGAGTATGTAGAAAAGCTCAAGTACTATTGCAGTGTTGAGGATGTTCAAATACGGTCCAATCCCAGAAATGCACGTGATCAGAGGGCTCAGGTTGATGATGAAGACACCGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTAATGTTGGATGAACGTGGACAAGACATAGGATCTGAGCAAATGGCGGAGTTGGTGGGTGATGCTGGAAATACTGGCGTTTCACGATTATCATTTTGTATCGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGGAACGTGCCAACCTATCGGTCAAGTTATCTTCACTGGTCTTAAATCATCAAATAGCATTACTTGTGCTCATGGAACAACTTTACAGGTCGTGGACCATTCTAAGAGGACAAAAGTACCATCATTAG 552 0.4366 MATTFHLSVSFNLHKGTKCKYTPQSVRALPIRIFSVGKKRSRGLQLLVDEYVEKLKYYCSVEDVQIRSNPRNARDQRAQVDDEDTAVMNLIRSDDWVVMLDERGQDIGSEQMAELVGDAGNTGVSRLSFCIGGPYGHGRKMRERANLSVKLSSLVLNHQIALLVLMEQLYRSWTILRGQKYHH* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0117 183 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 29 183 IPR003742 GO:0006364|GO:0008168
Apr9g0117 183 PANTHER METHYLTRANSFERASE 12 183 IPR003742 GO:0006364|GO:0008168
Apr9g0117 183 Pfam Predicted SPOUT methyltransferase 31 182 IPR003742 GO:0006364|GO:0008168
Apr9g0117 183 Gene3D - 28 183 IPR029026 -
Apr9g0117 183 SFLD SPOUT Methyltransferase 13 183 - -
Apr9g0117 183 SUPERFAMILY alpha/beta knot 30 181 IPR029028 -
Apr9g0117 183 PIRSF MT_bac 29 183 IPR003742 GO:0006364|GO:0008168
Apr9g0117 183 CDD RlmH-like 31 183 IPR003742 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0117 K00783 - gmx:100796609 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0117 9 1428578 1432249 Apr9g0117 9 1428578 1432249 ECH