Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0100 ATGCTTCGAAGTCACATTCACATTTTCTCTTCCTTCACGACCTCACTCCACTCTAAGCCTCTTCATTCCTCACATGTTCCTCTCTTTTGTTCTTCTTCCACTCCTACACGGCGTCGTTTGGTAAGGACCACCACTCCGCGTGAAACCAATCTCAAGCGCCTCACTTCGCGTATCGTTCATCTCACTCGCCGAAAACAGCTTCGCCAGATTTTGGATGAGATTGAGGTTGCGAAGAAGGATTTGGGGAAGCTGAACACGATAGTGATGAACGCGGTGATGGAGGCTTGTGTTCGTTGCCGTGACATTGATTCGGCGCTTAGGATATTCGAGGAGATGAGAAACCCTGATGGTTGTGGCGTCGATACTGTCACCTATGCCACGCTTGTGAAGGGGTTAGGTGAGGCAGGAAGGGTCAATGAAGCTTTTGAATTGCTTGAATCTGTGGAAAATGGTACTGCAACGGGAAGTCCAAAGTTGTCTGCTCCATTGATCTTTGGTCTGCTAAATGCCTTAATCGAAGCAGGAAACTTGCGTCGTGCAGCTGGCCTCCTTGCTCGATATGGTTTTGTGCTCCGCGAAGGTGGCAATTTTTCAGTTTCAGTATACAACATACTAATGAAGGGATACATAAACTCAGGCTATCCACTCACTGCAATAGACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGACAGGCTCACGTATAACACACTAATTTTAGCATGTGTCCAGAGTGAAAAGTTGGATACTGCAATGCAATTTTTTGAGGAAATGAAGGACAAAGCACAGAAATTCATCTGTGATGATCTGTTTCCAGATATTGTTACATATACGACAATGCTTAAGGGTTTTGGGCAAGCAAAGGATCTTGCTTCAGTTCTGAAGATAGTGCTGGAAATGAAATCTTGTCATGAATTATACATTGATAGAACTGCTTACACTGCAATAATTGACGCTTTACTAAATTGTGGCTCAGTTAAGGGTGCTCTCTGTATTTTTGGAGAAATGCTGAAGCAGGTTGGTCGGAATCCAGAGTTGAGGCCAAAACCTCACCTCTATCTTTCCATGATGCGTGCATTTGCTCTGCAAGGAGATTATGATTTAGTTAAAAATTTGCATAAACGGATTTGGCCTGATTCAGCAGGAACCATATTACTAGTTGCCCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCTGGGTTGATGTTGCTATTAAAACTCTTACTGAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATTGAGGCCATGTTGGGATTCTCAAAGTCATTATTCAGTCCTCACTTACTGCCTCAGGTTTCACCTTCTGAGCCAATTGAGAATTATATGATACCATTTGAAGCAACAAGGCCACTACTAGGTTCATTAAAGCTGGAAAAAGTGGTTATGCGTTTCTTTGGTGAAACGGTAGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTGCACCGTGAAGACTGCAACCAGTTGGATGCTTCACTTGCAACAATGATGAGAAGTCCACCTCCATGTGTTACGACATCAACACCTGTTGGTCGTGTAGTTGATTTAATTTTAGAGAAGCGATATACGATGGTTATTATTGTAAATTACAGAAACTCATATGCTACTACCTTACACAGATCTAGAGCAGTTGGAGTTTTTACATCAGAACAACTGAGTAGGCTTATCACACCTGTATCTGAAGTAACCGGGGAAGACCTTCCGTTGTCAGGTTGTGTTGAAATGGAGGTGCAGAAGAACCTATGA 1827 0.4346 MLRSHIHIFSSFTTSLHSKPLHSSHVPLFCSSSTPTRRRLVRTTTPRETNLKRLTSRIVHLTRRKQLRQILDEIEVAKKDLGKLNTIVMNAVMEACVRCRDIDSALRIFEEMRNPDGCGVDTVTYATLVKGLGEAGRVNEAFELLESVENGTATGSPKLSAPLIFGLLNALIEAGNLRRAAGLLARYGFVLREGGNFSVSVYNILMKGYINSGYPLTAIDMLNEILRQGIMPDRLTYNTLILACVQSEKLDTAMQFFEEMKDKAQKFICDDLFPDIVTYTTMLKGFGQAKDLASVLKIVLEMKSCHELYIDRTAYTAIIDALLNCGSVKGALCIFGEMLKQVGRNPELRPKPHLYLSMMRAFALQGDYDLVKNLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGWVDVAIKTLTEIVSRWKGISWTSRGGMVAYRIEAMLGFSKSLFSPHLLPQVSPSEPIENYMIPFEATRPLLGSLKLEKVVMRFFGETVVPIVDEWGSCTGLLHREDCNQLDASLATMMRSPPPCVTTSTPVGRVVDLILEKRYTMVIIVNYRNSYATTLHRSRAVGVFTSEQLSRLITPVSEVTGEDLPLSGCVEMEVQKNL* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 346 IPR002885 -
Apr9g0100 608 PANTHER OS09G0431600 PROTEIN 18 590 IPR044781 -
Apr9g0100 608 Pfam PPR repeat 314 340 IPR002885 -
Apr9g0100 608 Gene3D Tetratricopeptide repeat domain 166 265 IPR011990 GO:0005515
Apr9g0100 608 Gene3D Tetratricopeptide repeat domain 39 152 IPR011990 GO:0005515
Apr9g0100 608 SUPERFAMILY CBS-domain pair 486 568 IPR046342 -
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Apr9g0100 608 CDD CBS_pair_SF 493 556 - -
Apr9g0100 608 Gene3D Tetratricopeptide repeat domain 266 442 IPR011990 GO:0005515
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 151 IPR002885 -
Apr9g0100 608 ProSiteProfiles CBS domain profile. 523 594 IPR000644 -
Apr9g0100 608 Pfam Pentatricopeptide repeat domain 270 304 IPR002885 -
Apr9g0100 608 Pfam PPR repeat family 85 132 IPR002885 -
Apr9g0100 608 Pfam PPR repeat family 199 244 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 123 147 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 89 113 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 236 262 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 314 341 IPR002885 -
Apr9g0100 608 TIGRFAM PPR: pentatricopeptide repeat domain 277 305 IPR002885 -
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 115 IPR002885 -
Apr9g0100 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 305 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0100 Apr-Chr9 1222253 1233600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0100 85 385 Glycosyltransferase AT1G05670 22.697 6.07e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0100 - - gmx:100813146 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0100 9 1222253 1233600 Apr9g0100 9 1222253 1233600 ECH