Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0059 ATGGCTTCTGATTCCCCTCGCAACCGCATCAATCAGTTTTATGCTTCGAAGAAAAGGAAAGCCGTTTCACCTCTTTCTAAAGCTGGGAGATCCGAAAAGGGTGCAAGGAATGTGGTTGATTTGTCTCCGAGTGCCAAAGGCACTTTGGAGAGTTACTTGGTCACGTCGCAGGATTGTTGTGGTGGCCGCGACGGCGACGCCGGGGTGTCGAATGCTGTCGCCACCGCTCATTCGGCTCGGCTCGATTCGGTTAAGAGAAATTTAGCATCACAGATTGATGGTGATGGTTCCCTTGGCAATGAAATTAACGAGCTGGTTGAGGATCATGTCAAGGAAAACAGTTGCAGCGAGTTTGGAAAGGGTGTGGGGAACTCGGAGCTGAAACGGTTTAAAGTGGATTTTTTGTCTCTGTATTGCGGTGAATTGCACCGTAGCATGGATTCACCTGAGATGAAAATGGATGACTGCGTGAGACATGGTTCTGTGACTTCGGTAGAGGAAAACAGTTGTGTACTGACGAAGCGCGATGAGACTGCTGGTGAGCCATGTTTTGATGGTGGAAAGGGATCGTCGAGTGAAAAGATCCCTGAGGATGTCAAGTCTGGTGTTGTTGGTAATACTTTGCCATATGTTGTTGGCTCTTCTACGAAGGTTTCTTGTGGTGGTGATGCTATTGCCCCGGAGGCAAGCTTCCGAAAATGCAGTAATACTCCTAAATCTTCTATGAACATGGCTGAGTGCTATACGCCGGGATCTTTGATTGTTAAAGCATGTGTTAAGGAGACTCCAAAGTCAACACGTGGCAGTTCGATGTTTTCGCCTGGAGAAGCATTTTGGAATGAAGCGATTCAACTTGCTGATGGTTTGTCTGTTCCTGTAGCTAATGATGATTCTAATGTTGTAGAAGAAAGTAATGTGGTGGAAGATGAACTTGAGGTGAAGAACTCATGCAATTTACAAAACCGTGATGGCAAGCCAAGAAAAATATTGGATCAAAGTAAAACCAGAATCTGGAACAGGGACATGGGTACTTCTTTAGGGTTAGTTGGGATGCATACAAAAGATTCTGTGAAAGAAGCATCCAGCCTTCCGGTTAAGCATTTTGATTTTTCGCTTGAGGACAATAATTTGGTCGAAAATAATATACAAAATTGTCATGTTGTTGATCCGATCAATGTTACTTATGCTGGTAAACAGTATGAATCTTGTTCTATAGCAGGTCATACATATGAAAAGATGAACGAAGTGCAAGAGAAGACTTTGGTAGATGAATTAGGCAAAAGAGTGAGTCAGGGTAATGTTAGTTTGACATCTAATTCACCCCAGCATGAGGTCAGAACAGTGATTAGTGCTCATACATCTGAAGAAGGTAGTACTCCTTCAAGTAGGGTATCGCTTAATGATCATCTAGACCTAAATAGCTGGCTTCCACCTGAAATATGCAGCATATATAGAAAGAAAGGAATCTCAAAGCTTTACAATTGGCAGGTTGACTGCCTTCGGGTGAATGGTGTCCTACAGAGAAGAAATCTTGTTTATTGTGCTTCTACGAGTGCTGGTAAGAGTTTTGTTGCTGAGATTTTAATGCTGCGGAGGGTGCTAACAACTGGAAAAATGGCTCTACTTGTTCTACCATATGTATCAATTTGTGCAGAAAAGGCAGAACACATTGAACGTCTTCTTGAACCACTTGGTAAACATGTTCGTAGTTATTATGGAAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCGTTAATTAATAGATTATTGGAAGAGGGTCGTCTGTCAGAAATGGGAATTATTGTGATTGATGAACTGCATATGGTTGGTGATGCAAGTAGGGGCTATCTTCTAGAACTTATGTTGACCAAGCTTCGTTATGCAGCAGGGGAGGGTATTTCAAAATCAAGTGATGGAGAAAGTTCAGGTGGAAGCAGTGATAAGGCTGATCCTGCACAAGGTCTGCAAATTGTTGGAATGAGTGCAACTATGCCAAATGTGGCAGCAGTTGCTGACTGGCTTCAAAACATATTCTCATTGTTATATCTTATAAATCTGTTTGTCCCAAATTGCATTAAGGCAGCATTATACCAGACAGAGTTCCGGCCAGTTCCTCTAGAAGAATATATAAAAGTTGGTAATTCCATTTATAACAAGAATATGGAGCTCTCTAGAACAATCTCAAAAGCAGCTAACCTTGGTAGTAAAGATCCAGATCATGTTGTTGAATTATGCGATGAGGTTGTTCAAGAGGGACAATCAGTGTTAATATTTTGCTCTAGCCGGAAGGGTTGTGAATCAACTGCAAGGCATGTTGCAAAGTTCCTTAAAAGCTTTACTGTTGATGCTAATGATAATGATTGTGAGTTTGCTGATATTACTTCTGCTATTAACGCCTTGAGAAAGTGCCCTGCTGGGTTGGATCCCATATTAGAGGAAACTCTTCCTTCTGGTGTTGCTTTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTGTTGAAACCTGTTATCGGAAAGGCCTTTTACGTGTCTTAACTGCTACATCAACCTTAGCAGCTGGGGTAAATCTGCCAGCTAGGAGGGTAATTTTCCGCCAACCTAGAATTGGTTGCAATTTTATAGATGGGACAAGGTACAAACAGATGGCTGGTCGTGCTGGTCGAACTGGGATTGATACAAAAGGAGAAAGTATACTTATCTGCAAACCAGAAGAGATAAAAAAAGTTACGGGACTTCTTAATGAAAGCTGTCCTCCATTAAATTCCTGTTTAGCAGAAGATATGAATGGAATGACTCATGCAATCTTAGAAGTAGTGGCTGGAGGAATAGTTCAAAGTGCTAGTGATATTCACCGGTATGTTAGATGTACTCTTTTGAATTCAACAAAGCCATTTCTAGATGTGGTGAAATCTGCGCAAGAATCCCTTCGATGGTTGTGCAAAAGAAAATTTCTTGAATGGAATGAAGACACTAAACTCTACAGTACCACACCTCTTGGGCGTGCAGCTTTTGGAAGTTCTCTCTGTCCTGAAGAATCACTTGTTGTGCTAGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTACTTGCATCTGACTTGCATTTAGTTTATTTGGTGACACCAATCAATGTTGATGTTGAGCCTGATTGGGAATTGTACTACGAACATTTTGTGAAATTGTCTCCTCTTGACCAGGTTGGTTTATGTTAATCAGAATTTACCCTTTCCTTTTGGCAAGAGATGTCATTAAACCTTCTTGGATCGGTTGGTAATCGAGTAGGTGTGACAGAACCATTCTTGATGCGTATGGCACATGGCGCACCAATACGTGCTTCAAACAAGTCAAGAGATAATACAAGATCGTTGCACAATCAACAAAGAAATCAACTTGGGATTTCCAATGCAACAGTTAACTCTGATGATCAAACACTGCGTGTCTGTAGAAGATTCTATGTTGCTCTCATTTTGTCACTTTTGGTTCAGGAAACTCCTGTGGGTGAAGTTTGTGAAGCATTTAAAGTTGCCAGAGGAATGGTTCAGGGCTTGCAAGAGAATGCTGGAAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGAGGCTTGGGTGGCATGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAACCGTGTATCGTTTGGAGTTAGAGCAGAGATTGTGGAGCTTACCACCATTCCCTATGTCAAAGGTTCTCGAGCCAGAGCACTCTATAAAGCTGGTTTACGTACACCTCTTGCAATTGCTGAAGCATCCATTCCTGAAATAGTAAAAACACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCTGCACAAAGGAGCTTACAATTTGGTGTAGCAAAAAAGATAAAGAATGGTGCTCGCAAGATTGTTCTTGATAAAGCGGAGGAGGCAAGGATTGCTGCTTTCTCAGCCTTTAAGTCACTTGGATACAGTGTCCCACCGTTTGCTCCTCCCATGTTGTCTACTGCTTCTCATGATTCTATCAGGCAAGAAGCTGGAAGTACTTCTGGAAGTGACACAGCTGACACTAGTCATAGTCTCGTTGATGCAAATCACATTGGTAATTCAAATAAGTTCGCTTTAGAAAAAGAAAGAGAGGACTTAGTAAAATCATCTGATAATATTGCTCTGGCTTCTGTAGAAGGAAAATCTAGCAGTGGGATGCCATGTAGCTTGTCTACTGTTCCAATTTCAGGATCTACAAAGGATGAGGCCAATGGGAATTTTGACAATACCAATAATCCAGATGTGACCACCCTTGCTGTTCAGTTACAGAAACCAAATGATAAATATGGGGAACATGATGGGTGCCAGGCTCATTGTACAGAGGAACAACATATGAATGGAAATCAGACTAGTGGTAATGCTGGTAATTCCAGCCAGAAAGGTCCCATTAATGTGGTTAGTAGTCCTGGTGGACTTGATTCATTTTTGGATCTGTGGGACACTATGCCAGAGTTCTACTTTGATATCCATTACATCAAACGGTTGGAATTGCACTCTGCTGCCCCTTTCGAAGTACATGGCATAGCTGTCTGTTGGGAAAACTCTCCTGTGTACTATGTTAATCTTCCCAGAGATATTTTATTGTCTGAGTCTGACAATAGAAAAGATGACTGTTTATCGTTCAGTGCAGGCAGTTATAAGAAGAAAATTTCATCTTCTAATTCTAAGCAAGATTTGGAGATAGCTAGATATAGATGGATCAGAATTAGTAAAATAATAGGAAAAAGAAATGTCAGAAAGTTCACCTGGAATTTGAAGATTCAGATTCAGGTTCTGAGCAAGCCTGCATTTCCAGTTCAGAGATTTGGTTGCTTGGATGCTCTTGGAAAAAATATGGACCTTGAAATTGTAGACAATTCTTATGTGTTATTGCCCCCTATCCATGTGAAAGATGCAATTGATATGTGCATTGTGGCTTGGATTCTTTGGCCTGATGAAGAGAGGAGCTCTAATCCAAACCTGGATAAGGAGGTAAAGAAGAGGTTATCCTCAGAGGATGCTGCAGCAGCCAATCAAAGTGGCAGGTGGAGGAATCAGATGCGAAGAGCTGCTCACAATGGTTGCTGCCGTCGGGTTGCTCAAACACGAGCATTATGTTCTGTTCTTTGGAAATTACTTGTTTCTGAGGAGCTTGTTCAAGTGCTTATGGGAATTGAAATCCCATTGGTGAATATTCTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGGTGAAAAGGCTAAAACATCTTGAGAAGGAAGCTTATAAATTGGCTGGGATGACGTTTTCATTACATATGCCAGCAGATATTGCAAAGGTGTTGTATGAACACTTGAAGCTTCCCATACCTGGTGGGCGAAATAAGGGAAAACAACATCCAAGTACTGACAAGCACTGTTTGGATGCACTGAGGCATCAACATCCCATTGTTCCAGTAATTAAAGAACATCGAACAGTGGCAAAGCTGTTGAACTCTACACTAGGATCAATATGTTCTCTGGCTAGGCTATCTATAAGCACACAGAAATACACATTACATGGCCATTGGCTCCAGACATCCACTGCAACTGGCCGGCTCTCAATGGAGGAACCTAATCTTCAGTGTGTTGAGCATACAGTAGACATCAAAATGAAAGAGGATAAAGATGAAGGTGATGCTGATGAGAGTTATTTTAGAATTAATGCTCGTGATTTCTTTGTTCCTACTCAGGATAATTGGTTACTGTTGACAGCAGATTATTCTCAGATAGAGTTGAGGTTGATGGCACACTTCTCTAAAGACTCTTCACTCATTGAACTTCTCAGTAAGCCTGGTGGTGATGTCTTTACAATGATGGCAGCAAAATGGATTGGGTGTCCTGAGGTTTCTGTGGGTTCTCAGGAGAGAGATCAGACCAAAAGGATGGTGTATGGCATTCTTTATGGTATGGGTGCCAATAGCCTTGCAGAACAACTGGATTGCACTTCTGATGAAGCTGCTGAAAAGATTGCTAATTTCAAAAGCTCTTTTCCTGGTGTTGCTTCCTGGCTTCGTGCCGCTGTTGCATCTTGTCGTACTAAAGGATACGTGGAGACTCTCAAGGGAAGAAAACGGTTTTTGTCAAAAATAAAATTTGGCAGCAGTACAGAAAAGTCAAAAGCTCAGAGACAAGCTGTGAATTCCATTTGTCAGGGATCTGCTGCCGACATAATAAAGATTGCAATGATAAGAATTTACTCTGTAATTGTCACTGGAGTGGATAGCCTGGATTCCAGTTCTTCAGTAGCAACCAAGTTCCACATGCTTAAAGATCGTTGCCGGATTCTGTTACAGGTACACGATGAATTAGTGCTGGAAGTTGATCCTTCTGTGATAAAAGAAGCTACCCTACTGTTACAGACAAGCATGGAGAATGCAGTCTCACTTGTTGGTTTGTATTTTTATTTTTTATTTTTTTAGGGGGTGGGGTGGGGTGGAGTGAAGGTTGGCAAGATTAGAGTTCTGCTTATATGGTGATATCACCTATTCAGGATTTACATTTATGCTTCTGCAGTTCCTTTGCATGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATTTGCACCTGACAAATTCGAGGATGACACTTATCGCTGA 6702 0.4172 MASDSPRNRINQFYASKKRKAVSPLSKAGRSEKGARNVVDLSPSAKGTLESYLVTSQDCCGGRDGDAGVSNAVATAHSARLDSVKRNLASQIDGDGSLGNEINELVEDHVKENSCSEFGKGVGNSELKRFKVDFLSLYCGELHRSMDSPEMKMDDCVRHGSVTSVEENSCVLTKRDETAGEPCFDGGKGSSSEKIPEDVKSGVVGNTLPYVVGSSTKVSCGGDAIAPEASFRKCSNTPKSSMNMAECYTPGSLIVKACVKETPKSTRGSSMFSPGEAFWNEAIQLADGLSVPVANDDSNVVEESNVVEDELEVKNSCNLQNRDGKPRKILDQSKTRIWNRDMGTSLGLVGMHTKDSVKEASSLPVKHFDFSLEDNNLVENNIQNCHVVDPINVTYAGKQYESCSIAGHTYEKMNEVQEKTLVDELGKRVSQGNVSLTSNSPQHEVRTVISAHTSEEGSTPSSRVSLNDHLDLNSWLPPEICSIYRKKGISKLYNWQVDCLRVNGVLQRRNLVYCASTSAGKSFVAEILMLRRVLTTGKMALLVLPYVSICAEKAEHIERLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDASRGYLLELMLTKLRYAAGEGISKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVADWLQNIFSLLYLINLFVPNCIKAALYQTEFRPVPLEEYIKVGNSIYNKNMELSRTISKAANLGSKDPDHVVELCDEVVQEGQSVLIFCSSRKGCESTARHVAKFLKSFTVDANDNDCEFADITSAINALRKCPAGLDPILEETLPSGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCNFIDGTRYKQMAGRAGRTGIDTKGESILICKPEEIKKVTGLLNESCPPLNSCLAEDMNGMTHAILEVVAGGIVQSASDIHRYVRCTLLNSTKPFLDVVKSAQESLRWLCKRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLVVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYEHFVKLSPLDQVGLC*SEFTLSFWQEMSLNLLGSVGNRVGVTEPFLMRMAHGAPIRASNKSRDNTRSLHNQQRNQLGISNATVNSDDQTLRVCRRFYVALILSLLVQETPVGEVCEAFKVARGMVQGLQENAGRFASMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPEIVKTLFESSSWATEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARIAAFSAFKSLGYSVPPFAPPMLSTASHDSIRQEAGSTSGSDTADTSHSLVDANHIGNSNKFALEKEREDLVKSSDNIALASVEGKSSSGMPCSLSTVPISGSTKDEANGNFDNTNNPDVTTLAVQLQKPNDKYGEHDGCQAHCTEEQHMNGNQTSGNAGNSSQKGPINVVSSPGGLDSFLDLWDTMPEFYFDIHYIKRLELHSAAPFEVHGIAVCWENSPVYYVNLPRDILLSESDNRKDDCLSFSAGSYKKKISSSNSKQDLEIARYRWIRISKIIGKRNVRKFTWNLKIQIQVLSKPAFPVQRFGCLDALGKNMDLEIVDNSYVLLPPIHVKDAIDMCIVAWILWPDEERSSNPNLDKEVKKRLSSEDAAAANQSGRWRNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVQVLMGIEIPLVNILADMELWGIGVDLERCIQARKLLVKRLKHLEKEAYKLAGMTFSLHMPADIAKVLYEHLKLPIPGGRNKGKQHPSTDKHCLDALRHQHPIVPVIKEHRTVAKLLNSTLGSICSLARLSISTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHTVDIKMKEDKDEGDADESYFRINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLIELLSKPGGDVFTMMAAKWIGCPEVSVGSQERDQTKRMVYGILYGMGANSLAEQLDCTSDEAAEKIANFKSSFPGVASWLRAAVASCRTKGYVETLKGRKRFLSKIKFGSSTEKSKAQRQAVNSICQGSAADIIKIAMIRIYSVIVTGVDSLDSSSSVATKFHMLKDRCRILLQVHDELVLEVDPSVIKEATLLLQTSMENAVSLVGLYFYFLFF*GVGWGGVKVGKIRVLLIW*YHLFRIYIYASAVPLHVKLKVGRTWGSLEPFAPDKFEDDTYR* 2234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0059 2230 Gene3D - 1941 2085 - -
Apr9g0059 2230 SMART polaultra3 1917 2142 IPR001098 GO:0003677|GO:0003887|GO:0006260
Apr9g0059 2230 Gene3D - 698 931 IPR027417 -
Apr9g0059 2230 SMART ultradead3 488 713 IPR014001 -
Apr9g0059 2230 MobiDBLite consensus disorder prediction 1339 1367 - -
Apr9g0059 2230 MobiDBLite consensus disorder prediction 1 37 - -
Apr9g0059 2230 CDD DEXHc_POLQ-like 476 715 - -
Apr9g0059 2230 SUPERFAMILY DNA/RNA polymerases 1731 2160 IPR043502 -
Apr9g0059 2230 Pfam DEAD/DEAH box helicase 505 678 IPR011545 GO:0003676|GO:0005524
Apr9g0059 2230 Pfam DNA polymerase family A 1760 2214 IPR001098 GO:0003677|GO:0003887|GO:0006260
Apr9g0059 2230 Gene3D - 475 692 IPR027417 -
Apr9g0059 2230 PANTHER DNA POLYMERASE THETA 492 2221 - -
Apr9g0059 2230 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 502 694 IPR014001 -
Apr9g0059 2230 CDD DNA_pol_A_theta 1753 2216 - -
Apr9g0059 2230 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 752 949 IPR001650 -
Apr9g0059 2230 SUPERFAMILY Sec63 N-terminal domain-like 1152 1269 - -
Apr9g0059 2230 Gene3D - 1879 2160 - -
Apr9g0059 2230 SMART helicmild6 821 903 IPR001650 -
Apr9g0059 2230 Pfam Helix-turn-helix domain 908 999 IPR046931 -
Apr9g0059 2230 PANTHER DNA POLYMERASE I 492 2221 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 CDD SF2_C_Ski2 714 915 - -
Apr9g0059 2230 Pfam Helicase conserved C-terminal domain 752 903 IPR001650 -
Apr9g0059 2230 Coils Coil 1758 1778 - -
Apr9g0059 2230 Gene3D - 1111 1255 - -
Apr9g0059 2230 MobiDBLite consensus disorder prediction 1341 1367 - -
Apr9g0059 2230 PRINTS DNA-polymerase family A (pol I) signature 2046 2057 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 PRINTS DNA-polymerase family A (pol I) signature 1870 1892 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 PRINTS DNA-polymerase family A (pol I) signature 2024 2035 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 PRINTS DNA-polymerase family A (pol I) signature 2125 2138 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 PRINTS DNA-polymerase family A (pol I) signature 1987 2012 IPR002298 GO:0003887|GO:0006261
Apr9g0059 2230 Gene3D - 1484 1750 IPR036397 GO:0003676
Apr9g0059 2230 Gene3D Taq DNA Polymerase; Chain T, domain 4 1753 1862 - -
Apr9g0059 2230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 917 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0059 Apr-Chr9 764977 787528 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0059 K02349 - gmx:100813857 3445.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0059 9 764977 787528 Apr9g0059 9 764977 787528 ECH