Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0054 ATGAAAAATATGGCGTTAGGCTTTAGGGTTTTATGGACAGTGAGAAAGAGTTACAGAGGAAGGCTTCAATTGCCAAATCCTCATCATTCTTGTTTCAGCAAACACTCACATTCAAATTCAAATTCAAATGCAGATCCCTTTCTCCTCAAATTGCTTCAGGTCCCCAATTCGCGCATCAAAACGACGTTGGATCAGGAAATGCCTTCCATTCTAAGCTCCCAACTTTCTTGGGACTCCCTTGTTTCCTCTCTCTCCCGTTCGTCTTCCGACAAAGCTCAATTGGTTTTGGAATGGATTTTGGAGAAAATGCTGAAAGAAAATGAGAACGACTATAATCTTTTCCCTAAACTCATCCTTCTGTGTGGAAAGGTGAAGAATGTGGCACTGGGAATGCGTGTGTTTACTTCTATGGAGGCTAATGGAGTTCAACCCAATTCCCTTGCTTTCAATTCCCTTATAAGTGTTTGTTTGTCTTCCCATGATGTTGTTACTGCACTTAGTTTATTTGAGATCATGGTGAGTTCAGAGAGCTATAAACCTGATTTTCACACCTATAATATCTTTATTTCAGCATTTTCCAAGTCAGGGAATGTTGATGCCATGTTAGCTTGGTACTCGGCAAAGAAAGCTGCTGGACTTGGTCCTGATCTTCAAATGTTTGAATCCCTCATATCAGGCTGCATTAATTCAAGGAAATTTGATATTGCTGATAGAATTTTTGAAGAAATGATGATTTCTGAAATTGTACCTAATGCATCCATACTAGCATGTATCCTTAAAGGGATTTGCTGGCAAAAGAGTTTGGATCGAGCAGAAGAGTTTTTCAAGTTTGTAATGGATTCAAGGTGGGAGATTAATGAAAACATGGCGGATAAGTTGGTAGCATTGTATCAAGAACAAGGGCAAGTGGAAAAGATGGAAAAGCTACTTGAAACTATGACAAAGTCGTGTGCAGTTGCTTCTGGTGTCCTCTCACGAATCCATTGTGGGATTGTGAGGATGTATGCCATATTAGATAGATTGGACGAAGTAGAGTTTGCGGTGGGTAGAATGCTAAAACAAGGGTTTTCATTCACAAGTGCAGATGATGTTGAAAAGGTCATCTGCTCATACTTTAGAAGGGAAGCTTATGACAGGCTAGACATATTCTTGGAATGTTTGAAGAGGTGCTATGTGCTTGAGAAATCAACTTATGATTTGTTGATATCTGGCTATAGAAGAGCGCGCTTGCATGAAAAATTAGATTCAGTGATGGAAGACTTGAAATCAGTTGGATTAGCTTAA 1284 0.3949 MKNMALGFRVLWTVRKSYRGRLQLPNPHHSCFSKHSHSNSNSNADPFLLKLLQVPNSRIKTTLDQEMPSILSSQLSWDSLVSSLSRSSSDKAQLVLEWILEKMLKENENDYNLFPKLILLCGKVKNVALGMRVFTSMEANGVQPNSLAFNSLISVCLSSHDVVTALSLFEIMVSSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAAGLGPDLQMFESLISGCINSRKFDIADRIFEEMMISEIVPNASILACILKGICWQKSLDRAEEFFKFVMDSRWEINENMADKLVALYQEQGQVEKMEKLLETMTKSCAVASGVLSRIHCGIVRMYAILDRLDEVEFAVGRMLKQGFSFTSADDVEKVICSYFRREAYDRLDIFLECLKRCYVLEKSTYDLLISGYRRARLHEKLDSVMEDLKSVGLA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0054 427 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 426 - -
Apr9g0054 427 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Apr9g0054 427 Pfam PPR repeat family 144 194 IPR002885 -
Apr9g0054 427 TIGRFAM PPR: pentatricopeptide repeat domain 220 252 IPR002885 -
Apr9g0054 427 TIGRFAM PPR: pentatricopeptide repeat domain 183 206 IPR002885 -
Apr9g0054 427 Pfam Pentatricopeptide repeat domain 210 260 IPR002885 -
Apr9g0054 427 Pfam PPR repeat 396 425 IPR002885 -
Apr9g0054 427 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 426 - -
Apr9g0054 427 Gene3D Tetratricopeptide repeat domain 209 328 IPR011990 GO:0005515
Apr9g0054 427 Gene3D Tetratricopeptide repeat domain 67 208 IPR011990 GO:0005515
Apr9g0054 427 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0054 101 420 Glycosyltransferase AT1G05670 21.231 5.41e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0054 - - gmx:100778561 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0054 9 687754 689910 Apr9g0054 9 687754 689910 ECH