Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0052 ATGGGAAAACCTGACAATGATGATACTGATTCTGGAACTAGCAACAGAAACCAATCAAGAAATAACAACATGAAGAAAGGATTATTTCAATCAGAAGTAGTCAAGGGGGATCATTTTGATGGCAAGAATTGCATGAAGGAAAATGCTAAGGCTACAAATTCAGGTGGTAAACCGAGCTGCACTTTCTGCATGGGTAAAAATAGTTGCCGAATTGTGCATTCAAGAACAAAAGTAATGAATATTCTGATCAAGAGAGGAAAACCTCAGGAAGCTACTGTCATTTTTGAAAATCTGATTGAAGGCGGGCACCAACCATCTTTAGCAACATATACAACCCTATTAAATGCCTTGACCACTCAGAAGTGCTTCAAGTCTATACATTCTATTGTCTCACAGGTGGAAGAAAAACAAATGAAGCCTGACTCGATATTTTTTAACGCTCTTATAAATGCATTTACTGAATCTGGGAACATTGAGGATGCCAAGGAAACTGTTAAGAAAATGAAAGAATGTGGAGTAAGGCCTAGTACTAGCACTTATAACACATTGATAAAAGGGTATGGAACTGCTGGTAAGCCTGATGAGTCAATGAAAGTGCTAGATCTGATGTTAATGGAAGGCGATGTGAAACCAAATCTCAAGACATACAATATGCTTATCAGAGCATGGTGTAAACTGGGGAACATGTCTGAGGCGTGGAATGTGCTGAATAAGATGTCTGCCTCTGGAATGAAACCGGATGCTGTTACTTTCAACACTATAGCAACAGCTTATGCTCATAATGGAGAGACTTCTCTGGCTGAAACAATGATTTTAGATATGCAGAGGAATGGATTGAAACCCAATGAGAGAACTTGCACCATCATCATAAGTGGATATTGTAGAGAAGGTAAAGTAAAGGAAGCCCTGAGGTTTGTATACAAGATGAAGGATCTGGGGCTGCAGCCTGATCTTATAGTACTTAATTCCCTGGTTAATGGTTTTGTGGGCATGATGGATAGGGATGGAGTTGATGAGGTTTTAAAGTTGATGGAAGAATTTAAGATCCAACCAGATGTGATAACATATAGCACTATAATGAATGCATGGAGCCAAGCTGGATTCTTGGAAAAATGCAAGGAAATCTATGATAACATGTTAAGATCTGGTGTAAAGCCGGATGCGCATGCCTATGGTATTCTTGCCAAAGGTTATGTGAGAGCACAAGAAATAGAAAAGGCTGAAGAACTGCTAACTACCATGACTGAATCCGGTGTCCACCCAAATGTTGTTATATTTACAACTGTCATAAGTGGATGGTGCAGTGTTGGAAGAATGGACAATGCCATCAGGGTTTTTGACAAGATGTGTGAATGTGGGATTTCTCCAAATTTGAAGACTTTTGAGACATTGATCTGGGGATATGCAGAAGCAAAACAGCCATGGAAAGCAGAAGGAATACTCCAATTAATGGAAGGGTTTGACGTTCAACCCAAGAAATCGACAATCTTGCTTGTTGCAGAAGCTTGGTGTTTTGCTGGAATGAAAGAAGAGGCAAAGTCACTACTGAGTGCTGTAAAAACTGAACAGAAGAACAATTCAGCAGAGGAAGAGAACAATATAGCAGCTAAAAGTTCAGATAAAGTTTACCAAAAGCTACACACTGATGCTCCTTTCTGCAGTATCTTACAGATTCCATCTATATCTTCCCCTGACCAGAAAGGTTCGGCTTTAACAGCTAGAAGAAACAGAAGGCTCCTTAGAGATGGTGATTTGGAGACACCATCACTCACAACAAAATTCAAGTGTCATTCTCAAATTTGTAGATACGGTGAAGGATTTTCCATTACTTGCAAACAGTTTCAAGGACAGTATGGTACATATCAACTTGCAAATTCATGTACAACAGTATTCTTAAACTAA 1902 0.3922 MGKPDNDDTDSGTSNRNQSRNNNMKKGLFQSEVVKGDHFDGKNCMKENAKATNSGGKPSCTFCMGKNSCRIVHSRTKVMNILIKRGKPQEATVIFENLIEGGHQPSLATYTTLLNALTTQKCFKSIHSIVSQVEEKQMKPDSIFFNALINAFTESGNIEDAKETVKKMKECGVRPSTSTYNTLIKGYGTAGKPDESMKVLDLMLMEGDVKPNLKTYNMLIRAWCKLGNMSEAWNVLNKMSASGMKPDAVTFNTIATAYAHNGETSLAETMILDMQRNGLKPNERTCTIIISGYCREGKVKEALRFVYKMKDLGLQPDLIVLNSLVNGFVGMMDRDGVDEVLKLMEEFKIQPDVITYSTIMNAWSQAGFLEKCKEIYDNMLRSGVKPDAHAYGILAKGYVRAQEIEKAEELLTTMTESGVHPNVVIFTTVISGWCSVGRMDNAIRVFDKMCECGISPNLKTFETLIWGYAEAKQPWKAEGILQLMEGFDVQPKKSTILLVAEAWCFAGMKEEAKSLLSAVKTEQKNNSAEEENNIAAKSSDKVYQKLHTDAPFCSILQIPSISSPDQKGSALTARRNRRLLRDGDLETPSLTTKFKCHSQICRYGEGFSITCKQFQGQYGTYQLANSCTTVFLN* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0052 633 Gene3D Tetratricopeptide repeat domain 47 204 IPR011990 GO:0005515
Apr9g0052 633 Gene3D Tetratricopeptide repeat domain 343 555 IPR011990 GO:0005515
Apr9g0052 633 Gene3D Tetratricopeptide repeat domain 205 342 IPR011990 GO:0005515
Apr9g0052 633 PANTHER OS01G0228400 PROTEIN 1 633 - -
Apr9g0052 633 Pfam PPR repeat 277 310 IPR002885 -
Apr9g0052 633 SUPERFAMILY HCP-like 82 244 - -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Apr9g0052 633 Pfam PPR repeat family 140 187 IPR002885 -
Apr9g0052 633 Pfam PPR repeat family 421 469 IPR002885 -
Apr9g0052 633 Pfam PPR repeat family 351 399 IPR002885 -
Apr9g0052 633 Pfam PPR repeat family 211 259 IPR002885 -
Apr9g0052 633 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 633 - -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 145 176 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Apr9g0052 633 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Apr9g0052 633 MobiDBLite consensus disorder prediction 11 28 - -
Apr9g0052 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Apr9g0052 633 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0052 Apr-Chr9 675330 680477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0052 136 516 Glycosyltransferase AT1G05670 23.097 1.66e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0052 K17710 - gmx:100779093 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0052 9 675330 680477 Apr9g0052 9 675330 680477 ECH