Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0035 ATGGAAGACACCACCGTGAATTTTCACAACTTATCATCTGCTAAGGTTGTCGCTGTCGCTACAGGGGAAGCACACACTCTCCTTCTTACCGGGGATGGATGTGTGTATTCTTGGGGAAGAGGAATACTGGGGCGGCTTGGTGGAGGATCAGAACGAGATGAGCATTTTCCCGTTCTTGTCAAGTTTGGATCAGAACATGACTCTGTCAGAATAGTGGGAATTGCCGCTGGTGCTTATCATAGTCTTGCTCTAGCAGATGATGGATCTGTTTGGTGCTGGGGTTACAATATCTATGGTCAACTTGGTATTAATGGAGAGGATTACCATAGCAGAAAAAACACAGATGGAGATTATTCTGTAGTGCCCTGCTTATTGAACAACTTTCTTGAGTTGCACCCTCCTGATTCTTCATCAACTGTTTCAGAATCAGAACAAAAAGCATCACTCAAGATAATTGCTGTAAAAGCAGGAGGAATGATGTCTCTATCTATTGATAATCTTGGGGCCTTGTGGATGTGGGGAAATTGTCCTCAGCAAAGCAAAGAAGGTGGCTTCTCTCTTATAAGCGATTTCACTCCCACGCCAGTGTGGGATTTTCATGGACACACAGTAGTTAAAGTAGCATGTGGAAATGAACATGTTGTAGCACTTGTTAGTGCTGGAGAATCATACAAGGGTGAAGGTGATCTAGTGTGCTACTCTTGGGGTAACAACAATCATGGTCAATTAGGCTTAGGGGATAAGGAGAATAGGCCAAGACCAGAAGTGGTGAAAACATTTGATTTGGATTCGCCTTGGGCAATTTATGAGGTAGCATGTGGTGCCTTTCACACCGCTTTGCTCACTCATAAAAAGAGGCCTAGTGACACATTAGAAAGTAGTAGATGTTGGACATTTGGCCTTGGGGATAATGGTCAACTTGGACATGGAACAACACAAAGCACATTACTTCCTGAAGCTGTGAAAGAATTGCCACAAAATGTGCATCTAATTTCTTTGGATTGTGGCTTGTTTCATACTTGTGTTGTTTCCTCAGCTGGGGATGTGTGGTCGTGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGATAATTATGATGGAACAGATTCTGGTGATGCTCTTTCTCCCCTTCTTGTCTCTTGCAATCCTTATCAACCGAAATTTCCAAAACCGGTTCAAATAGCGTGTGGGGCTGCTCATACTATCCTTGTTGCACATGAGGGATATAAGCTATGGTCTTGGGGTAGAGGAAGGAGTGGTGTTCTTGGAAATGGTAAGACTATGGATTGCTACACTCCCACCATAGTGTTATGGCCTCCACTCATGGAAGATTTCAAACAACAAGAGGAACTACATAGCTATGTTGAGCATGATAAGATGAATGAAAAGGTGATTGAAGAAGTCAAAGAAACAGATGAGAAATTATTAACTGAATTGAAGCTGCTTCAAACAAAGGTAACTATTATGGAAAGATATGCTAGTATGCTTCATGGTTCTATCTTTGGAGAACCTTTTGATGAGCAAGATATCCCTGTCTCGTTGCAAAATTCAGGTGCATTTGATATTGCAAAGGAATGGGAGAACATGTTAGAGGCTGCTGATCATACAAAGCTAATTAAGTTGCAAATGCTCTACCGAAACATGCTTGCTGGTGTGAAAGATAAACTTATGAAGAGAAGGATTAAGGAGATTATAAATGAATGCCTACAATCTACACAGGTGGAAAATTAG 1734 0.4204 MEDTTVNFHNLSSAKVVAVATGEAHTLLLTGDGCVYSWGRGILGRLGGGSERDEHFPVLVKFGSEHDSVRIVGIAAGAYHSLALADDGSVWCWGYNIYGQLGINGEDYHSRKNTDGDYSVVPCLLNNFLELHPPDSSSTVSESEQKASLKIIAVKAGGMMSLSIDNLGALWMWGNCPQQSKEGGFSLISDFTPTPVWDFHGHTVVKVACGNEHVVALVSAGESYKGEGDLVCYSWGNNNHGQLGLGDKENRPRPEVVKTFDLDSPWAIYEVACGAFHTALLTHKKRPSDTLESSRCWTFGLGDNGQLGHGTTQSTLLPEAVKELPQNVHLISLDCGLFHTCVVSSAGDVWSWGMEKGLGLCPDDNYDGTDSGDALSPLLVSCNPYQPKFPKPVQIACGAAHTILVAHEGYKLWSWGRGRSGVLGNGKTMDCYTPTIVLWPPLMEDFKQQEELHSYVEHDKMNEKVIEEVKETDEKLLTELKLLQTKVTIMERYASMLHGSIFGEPFDEQDIPVSLQNSGAFDIAKEWENMLEAADHTKLIKLQMLYRNMLAGVKDKLMKRRIKEIINECLQSTQVEN* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0035 577 Gene3D - 2 226 IPR009091 -
Apr9g0035 577 Gene3D - 227 475 IPR009091 -
Apr9g0035 577 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 6 576 - -
Apr9g0035 577 SUPERFAMILY RCC1/BLIP-II 141 442 IPR009091 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 230 284 IPR000408 -
Apr9g0035 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 6 576 - -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 71 84 IPR000408 -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 90 106 IPR000408 -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 336 354 IPR000408 -
Apr9g0035 577 PRINTS Chromosome condensation regulator RCC1 signature 405 426 IPR000408 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 168 220 IPR000408 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 167 IPR000408 -
Apr9g0035 577 Coils Coil 466 486 - -
Apr9g0035 577 SUPERFAMILY RCC1/BLIP-II 13 107 IPR009091 -
Apr9g0035 577 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 74 84 IPR000408 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 346 IPR000408 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 408 IPR000408 -
Apr9g0035 577 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 87 IPR000408 -
Apr9g0035 577 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Apr9g0035 577 Pfam Regulator of chromosome condensation (RCC1) repeat 347 404 IPR000408 -
Apr9g0035 577 Pfam Regulator of chromosome condensation (RCC1) repeat 87 162 IPR000408 -
Apr9g0035 577 Pfam Regulator of chromosome condensation (RCC1) repeat 32 84 IPR000408 -
Apr9g0035 577 Pfam Regulator of chromosome condensation (RCC1) repeat 233 281 IPR000408 -
Apr9g0035 577 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0035 Apr-Chr9 455033 457503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0035 - - gmx:100801214 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0035 9 455033 457503 Apr9g0035 9 455033 457503 ECH