Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0026 ATGCTTCGTTTCTCTCCCCTTCTCCGCCACCCTCCACTTCACGCCATGGCGCGTGCAATCACATGCGCCACTCAACCCCATTTCTCTTCCTCACCCAACAACGCCACCCCTCGTCACCTGCCTCTGCCTTCAAAATCATCTTCGCTTTTCTGTCGCACCTTTCACGCCTTCGCTCGGTGCCGAAGTGAAAGGAAGAAGCCTTCGCCGGCATTGGTGGGCGTACGCGCCGGACAGAGGGAGTATCGGAAGGTGAGGAGGCGAGCACCGAAGAGCAAAGAGAAGGAGTTGCAACTCTGCGTCGACATTTGCATCGAAGAAGATTTGCCTGAGGATCCTGAAATTTTGAGCATTGCAGAGATGCTTCGTCTAAATGCTCCAATGGCAATGAAACTTGCATTTGATGGTTTGAAAGGTTCAGGGTATAAAACAAGAGACACTGCCATAAATGATGTTGGTGGGTTTGATAGTGTTGAGTTATCAGTGCTTCTTTGCAATGATGAGTTTATTCGAAAACTTAATAAGGAATGGAGAGATGAAGATCATGCGACAGATGTTCTCTCAATGTCACAACATGTTCCAGGGCTCAAGCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTGTTGAGACAGCAGCTCGACAAGCAGAGGAAAGAGGGCACACTCTTCTTGATGAGATTCGTATCCTCATGATTCATGGCTTGTTACATCTTCTGGGATTTGATCATGAAATAAGTGAAGAGGCTGAAGTAGAAATGGAGAGAGAGGAGGAACTCCTTTTAGAAAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAAAGCGCATGTGATGCTGAAACAAATTCAAACTCTCACCAAGACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAGAGTCAAATTTCTTCTACAACTGTCAAGGCTTTGAGAGAGGCATCATCAAGGGGTGTGAAAATTGTCATAGCTACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGATGGTGGATTTAGTGGGAAAAGATGGCATTGTTTCAGAATTATCTCCTGGGGTTTTCTTACAGGGATTGCTTGTTTATGGGAGACAAGGTCGGGAAATATTGAGAAGCAATTTAGATCCAAATGTCTGTAGGGAGGCATGTCTTTACTCTTTGGAGAGTAATGTTCCACTTATTGCATTTTGTGAAGGGCGCTGCTTAACCCTTTTTGACAACCCGCTTGTTGATTCGCTGCATACAGTGTATCATGAACCAAAGGCTGAGGTCATGCCGTCTATTGAACATCTATTGGCTGCTGCTGACATACAGAAAATGATTTTCTTAGATACTGACCAGAGGGTGGCTGATACTTTACGTCCATACTGGTCAGATGCAACAAAAGGTCGTGCCACAGTTGTTCAAGCTGTGCCAGATATGCTGGAAATTGTACCCTTGGGAACATCGAAGGGGAATGGAGTAAAAGTGCTGCTGGATCATTTGGGGGTTACTGCTAATGAGATAATGGCTATTGGGGATGGGGAAAATGATGTTGAGATGGTTGAGCTGGCTTCTCTAGGCATCGCACTAAGTAATGGAGCAGAGAAGACCAAAGCTGTGGCTAACGTAATTGGTTTAAGCAATGATGAAGATGGCGTAGCAGATGCCATCTACCGGTTTTGGGACCACAAAACTAGTGGTGTTGGAGTAATGTAG 1761 0.4458 MLRFSPLLRHPPLHAMARAITCATQPHFSSSPNNATPRHLPLPSKSSSLFCRTFHAFARCRSERKKPSPALVGVRAGQREYRKVRRRAPKSKEKELQLCVDICIEEDLPEDPEILSIAEMLRLNAPMAMKLAFDGLKGSGYKTRDTAINDVGGFDSVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPGLKLPILMLGDIVISVETAARQAEERGHTLLDEIRILMIHGLLHLLGFDHEISEEAEVEMEREEELLLESLGWKGKGLIKSACDAETNSNSHQDSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISSTTVKALREASSRGVKIVIATGKARPAVIDIFKMVDLVGKDGIVSELSPGVFLQGLLVYGRQGREILRSNLDPNVCREACLYSLESNVPLIAFCEGRCLTLFDNPLVDSLHTVYHEPKAEVMPSIEHLLAAADIQKMIFLDTDQRVADTLRPYWSDATKGRATVVQAVPDMLEIVPLGTSKGNGVKVLLDHLGVTANEIMAIGDGENDVEMVELASLGIALSNGAEKTKAVANVIGLSNDEDGVADAIYRFWDHKTSGVGVM* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0026 586 SFLD C2.B: Phosphomannomutase and Phosphatase Like 308 575 - -
Apr9g0026 586 Pfam Endoribonuclease YbeY 154 263 IPR002036 GO:0004222|GO:0006364
Apr9g0026 586 CDD HAD_Pase 308 574 - -
Apr9g0026 586 Gene3D - 308 572 IPR023214 -
Apr9g0026 586 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 150 269 - -
Apr9g0026 586 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 158 264 IPR002036 GO:0004222|GO:0006364
Apr9g0026 586 TIGRFAM Cof-subfamily: Cof-like hydrolase 307 572 IPR000150 GO:0016787
Apr9g0026 586 SFLD Haloacid Dehalogenase 308 575 - -
Apr9g0026 586 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 17 576 IPR002036 GO:0004222|GO:0006364
Apr9g0026 586 ProSitePatterns Uncharacterized protein family UPF0054 signature. 233 243 IPR020549 -
Apr9g0026 586 Hamap Endoribonuclease YbeY [ybeY]. 99 268 IPR002036 GO:0004222|GO:0006364
Apr9g0026 586 Gene3D - 394 501 - -
Apr9g0026 586 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 17 576 - -
Apr9g0026 586 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 307 544 IPR006379 -
Apr9g0026 586 ProSitePatterns Hypothetical cof family signature 1. 307 318 - -
Apr9g0026 586 Gene3D Metalloproteases ("zincins"), catalytic domain 136 266 IPR023091 GO:0004222
Apr9g0026 586 Pfam haloacid dehalogenase-like hydrolase 308 572 - -
Apr9g0026 586 SUPERFAMILY HAD-like 301 575 IPR036412 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0026 - - gmx:100810101 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0026 9 353652 364467 Apr9g0026 9 353652 364467 ECH