LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g0024	ATGGGTTTCGGTTTCGGTTTCAGTTTGAATCCCAGGCTCAGATATAACCTTCCTCTTCACTCTCCTCATTCCTTTACCACTTCTTCTGGTCACTTCTTTTCTTTTCTTTCCTTTTTGTTTTACCAATTCTCATTATTATTAATCCTTTCTTCTCTTTTCCTAACTTTTCTGTTGAATTTTTATGCAGCTGGAGTCAGGCTATCTCTGCCCTCCACAATTTTTGAGGAAGGAGAAACTTTGCTGAAAGATTTTGGAAGGGTATTTGCATTTTCGGCGTCAGGCTTAGAAACCCTGCAACATGATTCATTAGGAAGAGAAGAAACCAAGGTAAACAAAGGAAAGAGGTCACTGAGTAGTGTACATGAAATGATTGATAATTCCCAAATGCGTTTTGGAGAGGTATCTACCATCTCTACGAAGTTTCAGTCATTCAGGGATACACATTTTCGTTTGTTAATGGAGAACCTAGGTGTTTTAGAGGAAACTTTTGCTGATTCTGAAGCACTGAGGCTGGAAAAGGATATTATATTGCAACTAGAAAAGCTTGGTGCTCTTGAGTTGTTCAATTTTTGCCTGTCAAAATCTCTTGGAACCTCACTTGTATCAGACTACACTGATGGACTTGCTGAGCAAGTTGAAGAGAATGAGAGAAACTGCAAAGTAGATGACTACAAGGGGAAAGTTTTTGTTCAGTCTAGCAGGAAAAAGGAAACTAAAACAAAGAAGAGGGCATTTGTTCCCACAGCTGTTTCCTCTCAGTCATTGCCTTTGAAAGCTAGTCAGGAAGATCTATCACGTTTCTCAGCTTCATTTGTTAAAACAGCATCAAATACTAAAAATAAAAGAATAATGGTTGCTAAAAGGGAGGCAGAGATGTCAAAAGGAGTAAAGGTGCTAGCAGAATTAGAGAAAATTAAAATAGCTATAGAAGAGGATACCAAGCGAGCAGCAAGTTTGAATAGCTGGGCAGAAGCATCTGGAGTTGATGAAAAGGTGCTACAACAGCTATTGCATCATGGCCATTATTGTCAAGATGAGCTCATAAGGAGTACTCGTACCTTAGTTCTATACCTTGCCAGAAAATACAGGGGTATGGGAATAGCATTGGATGATTTGCTTCAGGCTGGATATGTAGGGGTTCTCCAAGGAGCAGAGAGATTTGACAGTACAAGGGGGTACAAATTCTCAACTTATGTGCAGTACTGGATAAGGAAATCAATTTCAAGAATGGTGGCACTATATGCACGAGGAATTGTAATTCCTTGGTCATTGAACAGGGCAATAAATGAGATCCAGAAAGCTCGAAAATCCATGAAAAGTACCTCCATGAAATGCCCAGATGATTATCAAATTGCAAAGATGACAGGTCTTTCACTTGATAAAATTAGATCAGCTAGCAATTGTCTGAGAATAGTCGCTTCAATTGATCAGAAGGTGGGGGATTGCATTAGTGTAGAATATATGGAACTTATTGCTGATACGTTAATAGAGAATCCGGAAGAAGTTGTCATGAAGCAGCACATGAAAAAGGACGTACATGATCTGCTGAAAGGCTTGAACTCTAGGGAAAGGCAAATATTAATGCTACGCTTTGGCCTTAATGATAATCAGCCCAGGTCACTTCAGGACACAGGGAAGGTTTTCAAAGTGAGCAAAGAGCGGATAAGGAAGATAGAGAAAAAAGCTCTAACAAAGTTACGGAATGAAGCAACCAACTCAAAGTTAAATTATTATTTGGATCCGTAG	1746	0.3923	MGFGFGFSLNPRLRYNLPLHSPHSFTTSSGHFFSFLSFLFYQFSLLLILSSLFLTFLLNFYAAGVRLSLPSTIFEEGETLLKDFGRVFAFSASGLETLQHDSLGREETKVNKGKRSLSSVHEMIDNSQMRFGEVSTISTKFQSFRDTHFRLLMENLGVLEETFADSEALRLEKDIILQLEKLGALELFNFCLSKSLGTSLVSDYTDGLAEQVEENERNCKVDDYKGKVFVQSSRKKETKTKKRAFVPTAVSSQSLPLKASQEDLSRFSASFVKTASNTKNKRIMVAKREAEMSKGVKVLAELEKIKIAIEEDTKRAASLNSWAEASGVDEKVLQQLLHHGHYCQDELIRSTRTLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSISRMVALYARGIVIPWSLNRAINEIQKARKSMKSTSMKCPDDYQIAKMTGLSLDKIRSASNCLRIVASIDQKVGDCISVEYMELIADTLIENPEEVVMKQHMKKDVHDLLKGLNSRERQILMLRFGLNDNQPRSLQDTGKVFKVSKERIRKIEKKALTKLRNEATNSKLNYYLDP*	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g0024	581	Pfam	Sigma-70, region 4	515	568	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PANTHER	RNA POLYMERASE SIGMA FACTOR SIGC	63	580	-	-
	Apr9g0024	581	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	63	580	-	-
	Apr9g0024	581	CDD	Sigma70_r4	509	567	-	-
	Apr9g0024	581	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	345	569	IPR014284	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PRINTS	Major sigma-70 factor signature	371	384	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PRINTS	Major sigma-70 factor signature	395	403	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PRINTS	Major sigma-70 factor signature	519	531	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PRINTS	Major sigma-70 factor signature	540	555	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	PRINTS	Major sigma-70 factor signature	555	566	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	Coils	Coil	424	444	-	-
	Apr9g0024	581	Gene3D	-	205	416	-	-
	Apr9g0024	581	Gene3D	-	419	573	-	-
	Apr9g0024	581	Pfam	Sigma-70 region 3	427	502	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	Pfam	Sigma-70 region 2	347	410	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Apr9g0024	581	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	420	493	IPR013324	-
	Apr9g0024	581	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	479	579	IPR013324	-
	Apr9g0024	581	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	285	412	IPR013325	GO:0003700\|GO:0006352\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g0024	Apr-Chr9	341377	345951	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g0024	K03093		-	gmx:100802522	818.535

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g0024	9	341377	345951	Apr9g0024	9	341377	345951	ECH