Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2645 ATGGAGGTTCAACGACATGCACGGTCTGAAGACAACGATCCTGCTGAAAATGCTTGTGCTAGTAGTTCTTTGAATCAAGGTGATCTTGTGAGTGTGTCTGCTAACAGCAATCCAAGTGCAAATAGTGAAAGCAATGAAGTTAATGAACCGGGTGGCATTTCTTATAAGAAAAGTAATAACCCACATATCTATAGACAGGATGTTGTGAAAAACAGTATCAGTGGCATGATTGGAATTGTGACAGAAGTTGCTGGTGATACAGACTCAGATTCAGATAGCAGCATCACTGATGATGAGAACGATAGTGAGAATGAGGATGGTGATGCTGAAGGTGAGGAAGGCGATGAAAGTAATGATGCTAGCAAAAATTCTGAAAGTAATGGTGTTGCTGGGCATTGTAAACCTGATGCACTTCAGGCTGAGCAGCTGCGTGTACTGTGGATGGATGAATCTGAATCCACTCAAAATTTCAGTGAAGTAGAAGTCGTTGATCGTGGATTCATACATGGGGATTTTGTTGCTACTGCTTCAGACCCTACTGGGCAAGTGGGTGTAGTGGTTGACGTCAATATCTGCGTAGATCTGTTGGCCCATGATGAATCTATAATAAAAGATGTCTCATCAAAAAACTTGATGCGTATCAGGGATTTCACTGTTGGTGATTATGTGGTGCATGGGCCCTGGCTAGGCAGAATTGATGATGTTTTGGATAATGTGACTGTCTTATTTGATGATGGGTCAGTTTGTAAAGTCTCCAAAGCAGATCCATTGAATCTTAAACCGATTTCTAAAAATATTCTTGAAGATGGGCATTTTCCTTATTACCCAGGGCAACGTGTAAGGGCTAGCTCCTCATCAGTCTTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGGTTAGAAGGTACAGTCACTAAAGTTACAGTTGGATCAGTGTTTGTTTATTGGATAGCATCTGCAGGTTATGGGCCATATTCTTCTACTGCCCCTGCTGAGGAGCAGAGTCCCAAAAACTTAAAATTGTTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGCGACTGGTGTCTCTTACCCTCATCCGCATTGTCATTCTCAGCTTCCATGGACAAAAGCATATCAAAATTGAAACTTAATGATTCTGCTAACAATGAATTAGAATCTAATCAGACAGGAGGTTGTGGTGATTCTGAAGAAGCTACAGTTGAGGAATCAAATGGTAATAAGGATACTATGGACCTTGATCCAGTTGATGCTTTGGAAGGGGATGATGGAAATGATAGAATTAATCCATCACTGTCAAAGGAACCTGTCCATGAAGCTTGGCCTCTTCACCGCAAGAAAATTAGGAAAGTTGTCATCAGGAAAGAAAAAAAGGTGCGGAAGAAAGAGGAAAGTTTTGAGAAAGCTCTTCTGATTGCCAACACCAGGACTAGAGTTGACGTTGCATGGCAGGATGGAACAATAGAGCACGATATAAATTCTACAAGATTAATTCCTATAGATAATCCTGGTGATCATGAATTTGTTTCAGAACAATATGTGGTAGAGAAGACCTCCGATGATGGTGAGGATATTTCTGAAACTAGGCGAGTTGGTGTTGTAAGAAGTGTGAATGCCAAGGAGCGGACAGCTTGTGTGAGGTGGTTAAAAAAAGTTGCCAGAGCAGAAGATCCTCGAGAGTTTGACAATGAGGAAGTTGTAAGTGTGTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTACGGTGACGTGGTTGTTCGGCTGTCACCCGTGTCTGTTGGTTTAGAAACAGCATCTGCTGGAGAGTCCCATGAGAAATCAAAGCAGAAAGGTGAAGAAAGTGGGATAAAAAAGGAAGGAAAAAACCAAACTTGTACTAGTAAAGTAGAAAATGTGCCTGGTGGTGAAAATTGTGAGGAGTTTTCTGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCCGATGGGATGGTATCAATGGTTGGACCTCAAGCAATCTATGTGGTTGGTCGAGACGATGACGATGAATCAATTGCTGCTGGGAGTGAAATAAGCGATGCTGCCAGCTGGGAAACTGTTAATGATGATGAAATGGAAGTTCTTGAGGATTCCAGAGAGGATATTGAGAGGGAAAATTCCAGCAGTGTTATTTCTGAGGCAGAAGAAAGTGGAGAAAATGACTTTGGTAGGGCTGGAGCACTTTCTGTCCCCCTAGCAGCATTTCGATTTGTCACCAGACTTGCCAGTGGAATATTCTCAAGGGGTCAAAGGAACTTAGATGCTGTTCACTTGCCGTCAAAAGGTGAAAGTGAACATTCATCACCAGTGGCTAATGATGAGTCTAGTTCTGAGAAATGTATTGCCCTTGATGATGATAATTCAGACAATAAGGATGAAAGACATGAGGAGGTTGTTCCAGAAGCATCTGAAATCGTGGAAGCATCTGAGGCACTCTGTCGCTTGAGAAATGAAGATGATCCTGCAAGTTTTGATAACGATGCTTGCAGTTTGAAACATTTTGACATAACCATAGATCCATCAGATCATTATTTTATTGGTGCAAATGGACAGGTACTTAACAACCGAAAATGGTTTAAGAAAGTGCAACAAGATTGGAGCATACTTCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTAAGAGCAGTCATTGTAGGGCCATATGGGACCCCTTACCAAGATGGGCTCTTCTTCTTTGATTTTCATCTTCCGCCAGAATACCCTGATGTTCCACCGTCAGCATACTATCATTCTGGTGGTTGGCGTATTAACCCTAATCTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCCAAATCTTCTAGCATCCTTCAAGTCCTAGTTTCACTGCAAGGATTAGTACTTAACTCTAAGCCTTACTTCAATGAAGCTGGGTATGATAAGCAGATTGGAACAGCCGAAGGAGAAAAGAATTCATTGTCATACAATGAGAATACATTTTTACTGAACTGCAAGACTATGATGTATCTTATGCGGAAACCCCCCAAGGATTTTGAAGTGCTTATCAATGAACATTTTAAAAGGCGTGGTCATAACATCCTCAAGGCTTGTGATGCATATATGAAAGGTTATTTGATTGGCTCTCTGACTAGAGATGCCTCTATTAGTGAAAAGAGCAGTCAGAATTCAACCTCTGTAGGTTTCAAGTTGATGTTAGCCAAGATAGTACCAAAGCTTTTCTTGTCACTAAGTGAGGTTGGAGCTGATTGTGAGGAATTTAAGCATCTCAAAGAGTTGTAA 3387 0.4136 MEVQRHARSEDNDPAENACASSSLNQGDLVSVSANSNPSANSESNEVNEPGGISYKKSNNPHIYRQDVVKNSISGMIGIVTEVAGDTDSDSDSSITDDENDSENEDGDAEGEEGDESNDASKNSESNGVAGHCKPDALQAEQLRVLWMDESESTQNFSEVEVVDRGFIHGDFVATASDPTGQVGVVVDVNICVDLLAHDESIIKDVSSKNLMRIRDFTVGDYVVHGPWLGRIDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNILEDGHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPYSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSALSFSASMDKSISKLKLNDSANNELESNQTGGCGDSEEATVEESNGNKDTMDLDPVDALEGDDGNDRINPSLSKEPVHEAWPLHRKKIRKVVIRKEKKVRKKEESFEKALLIANTRTRVDVAWQDGTIEHDINSTRLIPIDNPGDHEFVSEQYVVEKTSDDGEDISETRRVGVVRSVNAKERTACVRWLKKVARAEDPREFDNEEVVSVYELEGHPDYDYCYGDVVVRLSPVSVGLETASAGESHEKSKQKGEESGIKKEGKNQTCTSKVENVPGGENCEEFSDLSWVGNITGLKNGDIEVTWADGMVSMVGPQAIYVVGRDDDDESIAAGSEISDAASWETVNDDEMEVLEDSREDIERENSSSVISEAEESGENDFGRAGALSVPLAAFRFVTRLASGIFSRGQRNLDAVHLPSKGESEHSSPVANDESSSEKCIALDDDNSDNKDERHEEVVPEASEIVEASEALCRLRNEDDPASFDNDACSLKHFDITIDPSDHYFIGANGQVLNNRKWFKKVQQDWSILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLINEHFKRRGHNILKACDAYMKGYLIGSLTRDASISEKSSQNSTSVGFKLMLAKIVPKLFLSLSEVGADCEEFKHLKEL* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2645 1128 SMART ubc_7 880 1037 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 606 624 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 602 639 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 82 132 - -
Apr8g2645 1128 SUPERFAMILY UBC-like 862 1044 IPR016135 -
Apr8g2645 1128 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 56 1126 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 779 817 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 405 439 - -
Apr8g2645 1128 Gene3D Ubiquitin Conjugating Enzyme 848 1109 IPR016135 -
Apr8g2645 1128 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 877 1037 IPR000608 -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 15 61 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 387 439 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 91 115 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 717 742 - -
Apr8g2645 1128 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 56 1126 - -
Apr8g2645 1128 Pfam Ubiquitin-conjugating enzyme 882 1026 IPR000608 -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 798 817 - -
Apr8g2645 1128 MobiDBLite consensus disorder prediction 1 61 - -
Apr8g2645 1128 CDD UBCc 880 1030 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2645 Apr-Chr8 36238852 36246946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2645 152 365 Miscellaneous Gene Families AT2G33770 40.000 3.79e-49 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2645 K10581 - gmx:100809513 1818.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2645 8 36238852 36246946 Apr8g2645 8 36238852 36246946 ECH