Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2460 ATGGCCACCGCTACTTCTCAATCGCTTCGATTCCCTTCTGCTTCGCTCTCTCTCTCTTCTAAGCTTCCTCTATCCTCCGTCTTCTCCGTGTCCCTGCGCCCTCGCCGTCGCACTTCCCGCTCTCTCGTAGTTCTTGTTTCCGCCGGCCTCGACGCCAAGCCCACCGTTCTCGTTGCCGAGAAGCTCGGAGAAGCAGGCCTTAAGCTCCTCAAAGACTTCGCCAACGTCGATTGCTCCTACAATCTCAGTCCTGAGGAGCTATGCACCAAGATCTCGCTCTGCGACGCGCTCATCGTGCGTAGTGGTACCAAGGTTTCGCGCGAGGTATTTGAGTCCTCCGGCGGGAGACTCAAGGTCGTTGGTAGAGCCGGAGTCGGAATCGATAATGTGGATCTGGCCGCCGCCACCGAGCATGGATGCTTGGTCGTCAATGCTCCCACCGCTAACACCGTCGCCGCCGCCGAGCACGGGATCGCGCTCTTGGCTGCCATGGCGAGGAACGTCGCTCAGGCCGATGCGTCTGTTAAAGCGGGGAAATGGCAGAGGAATAAGTACGTTGGAGTGTCCCTGGTTGGGAAGACACTTGCTGTGCTGGGATTTGGGAAGGTTGGTTCTGAAGTTGCTCGCCGTGCCAAGGGGCTTGGTATGAATGTCATTGCACATGACCCTTATGCTCCAGCAGATCGTGCTCGAGCTATTGGCGTGGAGCTTTTGAGCTTTGAAGAGGCCATTGGCACTGCTGATTTCATCTCTTTGCACATGCCACTCACGCCTGCCACATCAAAGATGCTCAATGACGAGACTTTTGCAAAGATGAAAAAAGGAGTTCGCATAGTTAATGTTGCTCGTGGAGGGGTCATTGATGAGGATGCACTTGTTAGGGCACTGGATTCTGGAATTGTGGCTCAGGCAGCTCTTGATGTTTTCACAGAGGAACCACCCCCAAAAGACAGCAAGTTGATTCAGCACGAGCAAGTAACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCACTGAAAGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCCTCAGAGGTGTTAACTGAATTAAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGCTGGCTGTCCAGCTGGTGGCAGGAGGAAGTGGTGTAAAAACAGTAAAGGTCACTTATGCTTCCTCTAGGGCCCCTGATGATCTTGACACTCGCCTTCTTCGTGCCATGATAACAAAGGGTCTGATCGAGCCCATATCCAGTGTTTTTGTGAACCTGGTTAATGCTGATTTCACTGCCAAACAAAGAGGGCTTAGGTTTACCGAGGAGAGAGTTATTCTTGATGGTTCCCCTGAGAATCCACTTGAATTCATTCAGGTCCAGATTGCTAATGTGGAATCCCGATTTGCTAGTGCCATATCAGACTCTGGGGAGATCAAGGTTGAGGGTAGGGTGAAAGATGGTGTCCCCCATCTGACGAAGGTTGGCTCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTATGTAGGCAGGTAGATCAACCTGGCATGATCGGAAAGGTTGGGAGTATTTTGGGTCAGGAGAACGTGAATGTCAGCTTCATGAGTGTAGGAAGGATTGCTCCACGCAAGCAAGCTGTAATGGCAATTGGAGTGGACGAACAACCTAGAAAGGAAACTTTAAAGAAGATTGGAGAAATCCCTGCTATTGAAGAGTTTGTCTTCCTGAAGTTGTAA 1788 0.5095 MATATSQSLRFPSASLSLSSKLPLSSVFSVSLRPRRRTSRSLVVLVSAGLDAKPTVLVAEKLGEAGLKLLKDFANVDCSYNLSPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGVELLSFEEAIGTADFISLHMPLTPATSKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPPKDSKLIQHEQVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRFTEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGQENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKETLKKIGEIPAIEEFVFLKL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2460 595 ProSiteProfiles ACT domain profile. 523 595 IPR002912 -
Apr8g2460 595 Gene3D - 370 521 IPR029009 -
Apr8g2460 595 CDD PGDH_4 56 358 - -
Apr8g2460 595 TIGRFAM PGDH: phosphoglycerate dehydrogenase 56 594 IPR006236 GO:0004617|GO:0006564
Apr8g2460 595 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 158 333 IPR006140 GO:0051287
Apr8g2460 595 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 376 479 IPR045626 -
Apr8g2460 595 SMART AdoHcyase_NAD_2 183 337 IPR015878 -
Apr8g2460 595 PANTHER FORMATE DEHYDROGENASE 1 36 590 - -
Apr8g2460 595 Gene3D - 522 595 - -
Apr8g2460 595 Gene3D - 149 331 - -
Apr8g2460 595 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 272 288 IPR029753 -
Apr8g2460 595 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 243 265 IPR029753 -
Apr8g2460 595 SUPERFAMILY Serine metabolism enzymes domain 371 517 IPR029009 -
Apr8g2460 595 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 36 590 - -
Apr8g2460 595 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 152 334 IPR036291 -
Apr8g2460 595 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 53 186 - -
Apr8g2460 595 SUPERFAMILY ACT-like 513 591 IPR045865 -
Apr8g2460 595 Gene3D - 58 358 - -
Apr8g2460 595 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 56 365 IPR006139 GO:0016616|GO:0051287
Apr8g2460 595 CDD ACT_3PGDH-xct 524 595 - -
Apr8g2460 595 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 195 222 IPR029752 -
Apr8g2460 595 Pfam ACT domain 523 584 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2460 Apr-Chr8 34642644 34645968 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2460 K00058 - gmx:100808771 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2460 8 34642644 34645968 Apr8g2460 8 34642644 34645968 ECH