Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2436 ATGTTCAACGATTTGAAACGACGTCTACTTTTGCCCAATGACTTAACCTTCTCTTTCCTCTTTAAGGCTTGCTTTCGCTCCAAACAGGCCCGTTACGTTGAACAGATTCATGCCTACATTCAGAAGATGGGTTTTCTCTCTGACTCTCTTGTTTGTAATGGGTTGGTTGCTGTGTATGCTAAAGGCTTTAATAATTTGGTTTATGCCCGTAGAGTGTTTGATGAAATTCCTGAAAAAAGTGTAGTTAGCTGTTGGACTTCTTTGATCACTGGTTTTGCTCAGTCTGGTCAGAGTGAGGAGGTTTTGCAGCTTTTCCATGTGATGATTGGGCAGAAATTGTTTCCTCAAAGTGATACTATGGTCAGTGTTTTATCAGCTTGTTCTAGCCTTAAGATGTCAAAAATTGAGAAATGGGTTAACGTTCTTTCAGAATTGGTTGGTGATAGCACGAGTCCTGAAGAAACTTGCCAAGATTCAGTTAACACGGTCCTGATTTACTTGTTTGGTAAATGGGGGAAGATTGAGAAGAGTAGAGAAAGGTTTGACCAAATTTCTGCAACAGGAAGAAGAGGTGTGGTTCCATGGAATGCTATGATAAGTGCATACATTCAAAATGGCAGCCCTGTGGAGGGTTTAAGTCTTTTCCACAAGATGGTAGAAGAACAAACCACTAGACCTAACCACATTACAATGGTTAGTGTGCTTTCAGCTTGTGCTCAAATTGGTGATTTGAGTCTTGGTTCTTGGGTACACCAGTACCTAATATCTGTTGGATATAAAGGTACAATTGGGTCTAACCAAATTCTTGCTACATCTTTAATTGACATGTATTCTAAATGTGGCAGTTTGGATAGGGCAAAGGAAGTTTTTGAGCATACAGTCTCCAAAGATGTTGTCTTATTCAATGCAATGATAATGGGTCTTGCAGTAAATGGTGAAGGAGAGGATGCATTGAGACTCTTCTACAAAATGCCAGAATTTGGCTTACAACCCAATGATGGAACATATCTTGGTGCTTTAAGTGCATGTAGTCACTCTGGGTTGTTGGCAAGAGGACGCCAGATATTTAGGGACCTGACCTTTTCCTCTTCTCTTACATTGGAACATTATGCTTGTTATGTTGATCTTCTTGCAAGAGTAGGATTCATAGAAGAAGCAATTGAGGTTGTGACTTCCATGCCCTTCAAGCCTAACAATTTTGTCTGGGGTGCTTTGCTTGGAGGCTGCCTTCTCCATTCTAGAGTTGAGTTGGCCCAAGAGGTTTCCAGGAGGCTTGTTGAAGTAGACCCAAATAATTCTGCAGGCTATGTGATGTTGGCTAATACACTTGCCTCTGACAATCAATGGAGTGATGTCTCAGAGCTGCGGCTGGAAATGAGAGAGAAGGGGATCATGAAGCAGCCAGGAAGTAGTTGGATTATTGTGGATGGAGTTGTACATGAATTTCTTGTTGGCTATTTGTCACATCCTAAAATTGAGGTCATATATCATACATTGGCTGGATTGGTGAAGCATATGAAAGTAGCAAGCCAATATCAGTTTGTGTGCTGTTATTAG 1557 0.4098 MFNDLKRRLLLPNDLTFSFLFKACFRSKQARYVEQIHAYIQKMGFLSDSLVCNGLVAVYAKGFNNLVYARRVFDEIPEKSVVSCWTSLITGFAQSGQSEEVLQLFHVMIGQKLFPQSDTMVSVLSACSSLKMSKIEKWVNVLSELVGDSTSPEETCQDSVNTVLIYLFGKWGKIEKSRERFDQISATGRRGVVPWNAMISAYIQNGSPVEGLSLFHKMVEEQTTRPNHITMVSVLSACAQIGDLSLGSWVHQYLISVGYKGTIGSNQILATSLIDMYSKCGSLDRAKEVFEHTVSKDVVLFNAMIMGLAVNGEGEDALRLFYKMPEFGLQPNDGTYLGALSACSHSGLLARGRQIFRDLTFSSSLTLEHYACYVDLLARVGFIEEAIEVVTSMPFKPNNFVWGALLGGCLLHSRVELAQEVSRRLVEVDPNNSAGYVMLANTLASDNQWSDVSELRLEMREKGIMKQPGSSWIIVDGVVHEFLVGYLSHPKIEVIYHTLAGLVKHMKVASQYQFVCCY* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2436 518 Pfam PPR repeat 271 292 IPR002885 -
Apr8g2436 518 Pfam PPR repeat 84 110 IPR002885 -
Apr8g2436 518 SUPERFAMILY TPR-like 273 469 IPR011990 GO:0005515
Apr8g2436 518 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
Apr8g2436 518 TIGRFAM PPR: pentatricopeptide repeat domain 195 221 IPR002885 -
Apr8g2436 518 TIGRFAM PPR: pentatricopeptide repeat domain 84 115 IPR002885 -
Apr8g2436 518 PANTHER - 1 511 - -
Apr8g2436 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Apr8g2436 518 Pfam E motif 412 473 IPR046848 -
Apr8g2436 518 PANTHER OS01G0913400 PROTEIN-RELATED 1 511 - -
Apr8g2436 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Apr8g2436 518 Pfam PPR repeat family 296 343 IPR002885 -
Apr8g2436 518 Pfam PPR repeat family 191 239 IPR002885 -
Apr8g2436 518 Gene3D Tetratricopeptide repeat domain 1 160 IPR011990 GO:0005515
Apr8g2436 518 Gene3D Tetratricopeptide repeat domain 260 482 IPR011990 GO:0005515
Apr8g2436 518 Gene3D Tetratricopeptide repeat domain 161 259 IPR011990 GO:0005515
Apr8g2436 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2436 Apr-Chr8 34486428 34488315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2436 13 507 Glycoside Hydrolase AT3G49170 32.335 3.77e-83 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2436 - - aprc:113873302 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2436 8 34486428 34488315 Apr8g2436 8 34486428 34488315 ECH