Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2415 ATGGCCTCTTCTGTCTCATTATCACTCTCTGCACGCCACCTTTCATTCCTCCATGGAACAACGCTCTTTCCTTATCCTCACAGACACAGAGTGCCACCACGATGCTTCAATTCTTCCTCGGTTAAATGCTCCCTCGACCACGTCCCCAAACAATTCAGGCAGGAAAATCTCAAGGATGGATTGATGGAAAACTACAAAAATGCCTCTAAATATCTCTATGGCCTCACTCCTTCACAAATTGACATGTTCATGACCGAAGACAATCCTGTCCGCCGGCAATCTGAAGGAGTAACAGAGGAAAGCATCTCATCTGCCAAAAATTATTTGGATCATGGTGGAATGTGGAGTCTCTCTAGCATGGGCAACAATGACCCTTCAAAATACAGCATGAGTGTTAGTATGTATCGCGGAGGAGGTAGGATATCTGAAAGGCCAGATACAGCTCCACCTGATCTGCCTTCTTTGCTCTTGGATGCTCGAATAGTCTATCTGGGTATGCCGATTGTTCCAGCTGTGGCGGAACTTATTGTTGCTCAATTTATGTGGTTGGATTATGAGGACCCTTCTAAACCTATTTACTTATATATTAATTCATCTGGAACTCAGAATGAGAAGAATGAGTCTGTGGGATCAGAAACTGATGCATATGCCATTGCTGATATGATGTCTTATCTCAAATCAGATGTCTATACTGTGAATTGCGGCATGGCATTTGGTCAAGCAGCAATGATTCTGTCTGTTGGAGCAAAGGGTCATCGTGCTGTACAGCCAAATTCATCTACAAAATTATATCTCCCAAAAGTAAACAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGGCAAAAGAACTAGAGGCACATACCCAGTATTATATTGAGATGTTGGCAAAGTCAACAGGGAAATCTGAGGAAGAAATTGCTAAAGAAATTCAGAGGCCTAAATATCTACAAGGACAGGAAGCCGTAGACTACGGACTTGCTGACAAAGATTACGAGGCAATGCTTGCTCAATCAAGAGCTATGAGGGGACAAGATGGTGAGAATCCTCAAGTGCTTCCTTCTAGATTTAGGTAA 1077 0.428 MASSVSLSLSARHLSFLHGTTLFPYPHRHRVPPRCFNSSSVKCSLDHVPKQFRQENLKDGLMENYKNASKYLYGLTPSQIDMFMTEDNPVRRQSEGVTEESISSAKNYLDHGGMWSLSSMGNNDPSKYSMSVSMYRGGGRISERPDTAPPDLPSLLLDARIVYLGMPIVPAVAELIVAQFMWLDYEDPSKPIYLYINSSGTQNEKNESVGSETDAYAIADMMSYLKSDVYTVNCGMAFGQAAMILSVGAKGHRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEAHTQYYIEMLAKSTGKSEEEIAKEIQRPKYLQGQEAVDYGLADKDYEAMLAQSRAMRGQDGENPQVLPSRFR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2415 358 Pfam Clp protease 153 330 IPR023562 -
Apr8g2415 358 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 37 347 - -
Apr8g2415 358 PRINTS Clp protease catalytic subunit P signature 151 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr8g2415 358 PRINTS Clp protease catalytic subunit P signature 191 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr8g2415 358 PRINTS Clp protease catalytic subunit P signature 231 248 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr8g2415 358 PRINTS Clp protease catalytic subunit P signature 310 329 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr8g2415 358 Gene3D - 139 335 - -
Apr8g2415 358 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 37 347 IPR023562 -
Apr8g2415 358 CDD S14_ClpP_2 151 330 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr8g2415 358 SUPERFAMILY ClpP/crotonase 146 330 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2415 Apr-Chr8 34347602 34351623 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2415 K01358 - gmx:100806258 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2415 8 34347602 34351623 Apr8g2415 8 34347602 34351623 ECH