Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2414 ATGGCATCTGCGGTGCCGGCGACGGCGACGGCGACGGCGGGGCAAGAGTTGTCGAACCCTCCTTCGGACGGCATCTCGAACCTCCGGTTTTCGAACCACAGCGATCACCTGCTGGTGTCTTCGTGGGATAAGAGCGTGCGGTTGTATGATGCGAGCGCCAATGTGCTGAGAGGAGAGTTCATGCACTCTGGCCCCGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAATACTGTTAGACGGCTTGTATTCAGCTCCAATAAAGAGGATATTCTGGGAAGGCATGATGCACCTGTTCGTTGTGTTGAGTATTCCTATGCCGCAGGGCAGCTGATCACTGGTAGCTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACGCTAGTTGGGACATATCCACAACCTGAGCGTGTTTACTCTCTCTCACTGGTTGGACATCGTCTGGTTGTAGCGACGGCTGGAAGACATGTTAATATTTATGATTTGAGGAACATGTCTCAACCTGAGCAACGTAGAGAATCTTCACTAAAATATCAAACCAGATGCGTGCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGCCGGATTGCAATGGAATTCTTTGACCTGTCTGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAATCAGAAGCTGGTAGGGACATCGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGTACATTTGCCACGGGAGGTTGTGATGGCTATGCTAATGTATGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCTACAAGCATTGCAGCACTTTCGTTTAGCAGAGATGAACGCCTCTTGGCTGTTGCATCAAGTTACACATTCGAAGAGGGGCCTAAACCCCACGACGAACAAGATGCTATTTTTGTTCGCAGTGTAAACGAGATTGAGGTCAAGCCAAAGCCAAAAGTCTATCCCAATCCTCCAGCGTGA 1041 0.4928 MASAVPATATATAGQELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHSGPVLDCCFHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRIAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYANVWDGNNKKRLYQYSKYPTSIAALSFSRDERLLAVASSYTFEEGPKPHDEQDAIFVRSVNEIEVKPKPKVYPNPPA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2414 346 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g2414 346 Pfam WD domain, G-beta repeat 24 50 IPR001680 GO:0005515
Apr8g2414 346 Pfam WD domain, G-beta repeat 99 131 IPR001680 GO:0005515
Apr8g2414 346 Pfam WD domain, G-beta repeat 233 274 IPR001680 GO:0005515
Apr8g2414 346 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 10 341 - -
Apr8g2414 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 131 - -
Apr8g2414 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 283 IPR001680 GO:0005515
Apr8g2414 346 SUPERFAMILY WD40 repeat-like 21 308 IPR036322 GO:0005515
Apr8g2414 346 SMART WD40_4 92 131 IPR001680 GO:0005515
Apr8g2414 346 SMART WD40_4 10 50 IPR001680 GO:0005515
Apr8g2414 346 SMART WD40_4 226 274 IPR001680 GO:0005515
Apr8g2414 346 SMART WD40_4 53 90 IPR001680 GO:0005515
Apr8g2414 346 SMART WD40_4 139 175 IPR001680 GO:0005515
Apr8g2414 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 131 IPR001680 GO:0005515
Apr8g2414 346 Gene3D - 5 340 IPR015943 GO:0005515
Apr8g2414 346 PANTHER MRNA EXPORT FACTOR AND BUB3 10 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2414 Apr-Chr8 34344238 34346832 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2414 102 308 Miscellaneous Gene Families AT5G08390 22.857 2.59e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2414 K02180 - gmx:100820541 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2414 8 34344238 34346832 Apr8g2414 8 34344238 34346832 ECH