Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2409 ATGAGAAATCAACTTTTGTTCTTACCCATTTTTCTTTCATTTGTGGTACTCCCAACTGGTAGCCAAAAACATGCATGTGACAAGGGGTCAACTAAAACTAGCAACTTCCCATTTTGCAACACTTCCCTGTCGTACGAGGCAAGGGCCAAGGACTTGGTGTCACGCCTAACACTTGAAGAAAAGGCAAAACAATTAGTAAACCCTTCTGCGGGTATTTCTAGGCTTGGTGTGCCTGCTTATGAATGGTGGTCAGAAGCACTTCATGGGGTGTCCAATTTAGGACCAGGAACACATTTTGACAAGAGGGTGCCAGGTGCCACTAGCTTCCCAGCTGTGATATTATCAGCTGCAAGCTTTAATGCAAGTTTGTGGTACAATATGGGGCAGGTTGTGTCAACTGAAGCTAGAGCCATGTACAACGTGGATTTGGCTGGTTTGACATTTTGGAGTCCTAACGTGAATGTGTTCCGTGACCCAAGGTGGGGACGTGGCCAGGAAACTCCAGGTGAGGACCCTTTGGTGGTGTCTACATATGCTGTTAAGTATGTTCGTGGCCTACAAGAAGTGGATGATGAAGCAAGTGCTAAAGCTGATAGGCTTAAGGTTTCAAGTTGTTGTAAGCATTATACTGCTTATGATCTTGACAATTGGAAAGGCGTTGATCGCTTCCATTTTGATGCAAAGGTGACAAAGCAAGACTTGGAGGACACGTATCAGCCTCCGTTTAAGAGGTGTGTGGAGGAGGGGCATGTTAGCAGTGTCATGTGTTCTTATAATAGAGTGAATGGGATTCCTACATGTGCTGATCCAGACCTTCTCAAAGGGGTAATCAGAGGCCAGTGGGGTCTAGATGGGTACATTGTTTCAGACTGTGATTCAGTGGAAGTCTATTATGATGCAATACATTACACTGCAACTCCAGAAGATGCAGTGGCTCTTGCATTGAAAGCAGGTTTAAACATGAACTGTGGCAACTTTCTAAAAAATTACACTGTAAATGCAGTGAACTTGAAAAAGGTAGATGTAGCTACTGTAGACCAGGCCTTAGTATACAACTACATAGTTCTAATGAGATTGGGCTTCTTTGATGATCCCAAGTCGCTGCCATTTGCAAACCTTGGGCCATCCGATGTATGTACTAAAGACAATCAACAATTGGCCTTAGATGCTGCAAAGCAAGGAATAGTTTTGTTGGAGAATAATGGGGCTCTTCCCTTATCCCAAACTAACATTAAAAAATTGGCTGTGATTGGACCAAATGCTAATGCCACCACAGTTATGATTAGCAACTATGCAGGCATACCTTGCCGCTACACTAGCCCTTTACAAGGGCTACAGAAGTACATTTCTTCTGTGACTTATGCACCTGGTTGTAGCAATGTTAAATGTGGTGATCAGAACCTCATTGCAGCAGCAGCTAAGGCAGCAGCCTCTGCTGATGCAGTGGTGGTGGTTGTGGGATTAGACCAATCTATTGAAGCTGAGGGCCTTGACCGAGAGAACTTGACATTACCTGGATTTCAAGAGAAACTTGTGAGAGATGTGGCCGCTGCTACCAAAGGAACAGTTATTTTGGCCATCATGGCAGCAGGTCCAATTGACATTTCTTTCTGTAAAAGTGTTAGTAACATAGGCGGGATATTGTGGGTGGGGTATCCAGGTCAAGCAGGGGGGGATGCCATAGCTCAAACGATATTTGGAGACTACAATCCAGGTGGTAGGTCCCCTTTTACATGGTATCCACAATCTTATGCTGATCAAGTGCCCATGACAGACATGAACATGAGAGCCAACAGCAGTAGAAATTTCCATGGAAGAACCTATAGGTTTTATAATGGGAATTCCCTCTATGAATTTGGTTATGGATTAAGCTACTCCACATTTTCCATATACATTGCATCTGCTCCCTCCACCATATCTGCCACCCAACTTGAGTCTCTCTCTGATGGTCAAGCAATTGATGTTTCCACCATAAATTGTCAAGATTTGACATTTTTACTTGTCATTGGTGTGAAGAACAATGGACCCTTTAATGGATCTCATGTGGTGTTAGTGTTCTGGGAGCCAGCAACTTCAGAGATGGTGACTGGGGCTCCAATCAAACAATTGATAGGATTTGAAAGAGTACAAGTTGTGGTGGGGATGACAGAGTTTGTAACGGTGAAAATTGATATATGTCAATTGCTAAGTAATGTGGATAGTGATGGCAAAAGAAAGTTGGTCATTGGACAGCACACCATTTTGGTTGGCTCCTCTAGTGAAACACAAGTTAGACACCACATTGATATCAGACTTTCAGGGAGTGTGAATGGAAAAGAATTCATGTATGAATGA 2334 0.4344 MRNQLLFLPIFLSFVVLPTGSQKHACDKGSTKTSNFPFCNTSLSYEARAKDLVSRLTLEEKAKQLVNPSAGISRLGVPAYEWWSEALHGVSNLGPGTHFDKRVPGATSFPAVILSAASFNASLWYNMGQVVSTEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSTYAVKYVRGLQEVDDEASAKADRLKVSSCCKHYTAYDLDNWKGVDRFHFDAKVTKQDLEDTYQPPFKRCVEEGHVSSVMCSYNRVNGIPTCADPDLLKGVIRGQWGLDGYIVSDCDSVEVYYDAIHYTATPEDAVALALKAGLNMNCGNFLKNYTVNAVNLKKVDVATVDQALVYNYIVLMRLGFFDDPKSLPFANLGPSDVCTKDNQQLALDAAKQGIVLLENNGALPLSQTNIKKLAVIGPNANATTVMISNYAGIPCRYTSPLQGLQKYISSVTYAPGCSNVKCGDQNLIAAAAKAAASADAVVVVVGLDQSIEAEGLDRENLTLPGFQEKLVRDVAAATKGTVILAIMAAGPIDISFCKSVSNIGGILWVGYPGQAGGDAIAQTIFGDYNPGGRSPFTWYPQSYADQVPMTDMNMRANSSRNFHGRTYRFYNGNSLYEFGYGLSYSTFSIYIASAPSTISATQLESLSDGQAIDVSTINCQDLTFLLVIGVKNNGPFNGSHVVLVFWEPATSEMVTGAPIKQLIGFERVQVVVGMTEFVTVKIDICQLLSNVDSDGKRKLVIGQHTILVGSSSETQVRHHIDIRLSGSVNGKEFMYE* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2409 777 Pfam Fibronectin type III-like domain 681 753 IPR026891 -
Apr8g2409 777 Pfam Glycosyl hydrolase family 3 N terminal domain 102 323 IPR001764 GO:0004553|GO:0005975
Apr8g2409 777 Gene3D Immunoglobulins 649 764 IPR013783 -
Apr8g2409 777 SUPERFAMILY (Trans)glycosidases 36 394 IPR017853 -
Apr8g2409 777 Gene3D - 380 627 IPR036881 GO:0004553|GO:0005975
Apr8g2409 777 Gene3D - 48 369 IPR036962 GO:0004553|GO:0005975
Apr8g2409 777 PANTHER SUGAR HYDROLASE-RELATED 8 762 IPR044993 GO:0009044|GO:0045493
Apr8g2409 777 Coils Coil 776 777 - -
Apr8g2409 777 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 625 IPR002772 GO:0004553|GO:0005975
Apr8g2409 777 PRINTS Glycosyl hydrolase family 3 signature 109 128 IPR001764 GO:0004553|GO:0005975
Apr8g2409 777 PRINTS Glycosyl hydrolase family 3 signature 202 218 IPR001764 GO:0004553|GO:0005975
Apr8g2409 777 PRINTS Glycosyl hydrolase family 3 signature 276 294 IPR001764 GO:0004553|GO:0005975
Apr8g2409 777 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 628 IPR036881 GO:0004553|GO:0005975
Apr8g2409 777 SMART Fn3_like_2 681 753 IPR026891 -
Apr8g2409 777 PANTHER BETA-D-XYLOSIDASE 5-RELATED 8 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2409 Apr-Chr8 34313468 34316414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2409 21 767 Glycoside Hydrolase AT3G19620 70.861 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2409 K15920 - gmx:100817869 1417.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2409 8 34313468 34316414 Apr8g2409 8 34313468 34316414 ECH