Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2406 ATGAAGGTTGGTGCAGTATGTTGCAATTTGTTGTTCATCACCTCTTGCCTTTTACTGATCTCAGGGCATGGCGTCTATTCCATGTATTATGATTATTCTGCTCCTACAGAGTGTTTGGTTGAACCTGAGAGAGCACAGTATGAAGGAGGGATTATAGTAAATCCAGGATTTGATCACAACATAGAGGGTTGGACTGTGTTTGGAAATGGAGCAATTGAGGAACGAATATCTAATGAAGGCAATAGATTCATTGTTGCCCGCAAGAGAACACAACCAATTGATAGTTTCTCACAGCAGGTTCAACTTAAGAAAGGAATGCTTTACATCTTTTCTGCATGGTTTCAGGTCAGTGAAGGAAGTGACACTGTGACAGTTTTATTTAAAACGAATGGAAGTGAAGTGGTACGAGGTGGCCATGTGGTAGCAAAGCATGGATGCTGGAGTCTCCTTAAAGGAGGCATTGTTGCAAACTTTTCAAGTCCTGCTGAGATTTTTTTTGAGAGCAAGAATTCCACTGTGGAAATATGGGCTGACAATGTCTCCTTACAGCCATTCACTAAAGAGCAATGGAGATCACATCAAGACGCCAGCATTGAAAGGGTACGTAAGAGAAGGGTGAGATTCAAGATAACTCATATAAATGAAACAGCATTGGAAGGAGCAAAAGTGGAGGCCCAACCACTTAAGATGAACTTCCCATTTGGATGTGGAATGAACCATAATATCCTCACAAACAAAGAATACCAGAATTGGTTTGTGTCAAGATTCAAATTCACAACTTTCACCAATGAGATGAAGTGGTATAGCACAGAGATTATTGAAGGCCAGGAAAACTACACCATAGCAGATGCAATGCTGAAATTCGCCAAAGATAATGGCATTTCAGTCAGAGGTCACAACATTTTCTGGGACAATGAAAAATTTCAACCTGAATGGGTTAAGACCCTATCACCTGAGGAACTAAGCGAAGCAGCATCAAAAAGATTAAAATCAGTGGTTTCAAGATACAAAGGAGAACTCATTGCATGGGATGTGATGAATGAGAATCTCCACTTCTGCTTTTATGAGGACAAACTCGGTGAAAATGCCTCTGCAGAGGCTTTTGCAGCAACTTACCAACTTGATCCAGAACCAAACTTATTCTTGAATGAGTATAACACCATTGAATATAGTAGAGATGAGATTGCCAGCCCACACAATGTTCTGTCGAAACTCAGGAGTATTATGAACTATCCTGGAAATAGAGAAATACCAGTAGCAATAGGGTTGCAAGGCCACTTTACCCCTGGTCAGCCAAATATTGCTTACATGAGATCAGGCCTAGATCTTCTTGCTTCAGCTCAAGTTCCAATATGGCTCACAGAAGCTAGCGTGGATTCAGACCCAAATGCGGCAGAGTACTTCGAAGAGATACTAAGGGAGGGTTACTCTCATCCTTCTGTTAATGGGATTATAATGTTTGCTGGTCCATCACAAGCTGGTTTCAACAACACTCCCCTAGCAGATGAAAATTTCAAAAGCACTGCAGCTGGAGATGTTGTGGACAAGTTGATTGCTGAGTGGGGAATAATAAGGCCTCATTTTGCCACAGCAGATAGCAGAGGATTTGTAGATGTTTCATTGCATCATGGAGATTATGATGTAACTGTTACACATCCTCTAACCCACACTTCTGAAACACTGAAACTAAGTGTAAGGAAAGATTTTTCACTGGAAACCATCCACGTGAAAATGCATGGGTAA 1743 0.4114 MKVGAVCCNLLFITSCLLLISGHGVYSMYYDYSAPTECLVEPERAQYEGGIIVNPGFDHNIEGWTVFGNGAIEERISNEGNRFIVARKRTQPIDSFSQQVQLKKGMLYIFSAWFQVSEGSDTVTVLFKTNGSEVVRGGHVVAKHGCWSLLKGGIVANFSSPAEIFFESKNSTVEIWADNVSLQPFTKEQWRSHQDASIERVRKRRVRFKITHINETALEGAKVEAQPLKMNFPFGCGMNHNILTNKEYQNWFVSRFKFTTFTNEMKWYSTEIIEGQENYTIADAMLKFAKDNGISVRGHNIFWDNEKFQPEWVKTLSPEELSEAASKRLKSVVSRYKGELIAWDVMNENLHFCFYEDKLGENASAEAFAATYQLDPEPNLFLNEYNTIEYSRDEIASPHNVLSKLRSIMNYPGNREIPVAIGLQGHFTPGQPNIAYMRSGLDLLASAQVPIWLTEASVDSDPNAAEYFEEILREGYSHPSVNGIIMFAGPSQAGFNNTPLADENFKSTAAGDVVDKLIAEWGIIRPHFATADSRGFVDVSLHHGDYDVTVTHPLTHTSETLKLSVRKDFSLETIHVKMHG* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2406 580 SUPERFAMILY (Trans)glycosidases 219 521 IPR017853 -
Apr8g2406 580 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 36 576 - -
Apr8g2406 580 PANTHER GLYCOSYL HYDROLASE 36 576 IPR044846 GO:0004553|GO:0005975
Apr8g2406 580 SMART glyco_10 265 517 IPR001000 GO:0004553|GO:0005975
Apr8g2406 580 Gene3D - 40 185 - -
Apr8g2406 580 SUPERFAMILY Galactose-binding domain-like 49 184 IPR008979 -
Apr8g2406 580 Pfam Carbohydrate binding domain 50 154 IPR003305 GO:0016798
Apr8g2406 580 Pfam Glycosyl hydrolase family 10 229 465 IPR001000 GO:0004553|GO:0005975
Apr8g2406 580 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Apr8g2406 580 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 224 517 IPR001000 GO:0004553|GO:0005975
Apr8g2406 580 Gene3D Glycosidases 222 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2406 Apr-Chr8 34301235 34305253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2406 27 568 Glycoside Hydrolase AT4G33840 50.000 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2406 - - gmx:100777980 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2406 8 34301235 34305253 Apr8g2406 8 34301235 34305253 ECH