Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2396 ATGTTGCAAACCCTAGGAGCTTCAAGCCCTCGCTTTGTGAATCGATCGTGGCTCCGAAGCCTCAACCTCCGTGCATTCTCTTTCTCCTCCGATTATGGGGACCAGTCACGTGGTGGCCTTCCCCGATTTTATTCCGAGACTCTTCCTCCTTTCAAGGGTAATGTTATACGCGTAAAAGGTGATGAATTCTGGCATATGACAAAGGTATTGAGGTTGAGCACCAATGATAGGGTACAGCTATTCAATGGGAAAGGAGGTCTGGTAGAAGGATGCATACAAAACATCGACCGCACTGGACTTGATTTTGTTGCGTTGAATGATTTGATATCAATACCTCCACAAAATACACAATTACACGTTTTTGCTGGTTTTGGTACTCTGAAGGGTGGTCGTGCTGACTGGCTCCTAGAGAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCTCTACTGACTGAACGTTCTCCAGCAATCTCAGAAAGTCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGCCAGCGACTGCATGAAATGGTTCTGAAACCTCCTGTAGAGATTGATGACCTATTACACCGGATTTCACAATCAAAGCTATCTCTTGTTGCAACGGCGAGTGCAACTCCTGTTCTAAGTGCATTGATGACATTGGAAAAGGAAAATTGTGGCTTAATTATAATTGGACCAGAAGGCGACTTCACTGAGAAAGAAGTGAGTATGATGATAGAAGCTGGTGCTACAGCTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCTCCATAGCACTTTTAGCAACTGTCATGTTATGGTCTGACTCGCAACAAAGTTCAGTTGATTGA 858 0.4487 MLQTLGASSPRFVNRSWLRSLNLRAFSFSSDYGDQSRGGLPRFYSETLPPFKGNVIRVKGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQNIDRTGLDFVALNDLISIPPQNTQLHVFAGFGTLKGGRADWLLEKCTELGANSVTPLLTERSPAISESRVDRLERVILAASKQCQRLHEMVLKPPVEIDDLLHRISQSKLSLVATASATPVLSALMTLEKENCGLIIIGPEGDFTEKEVSMMIEAGATAVSLGPHRLRVETASIALLATVMLWSDSQQSSVD* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2396 285 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 40 282 IPR006700 GO:0006364|GO:0008168
Apr8g2396 285 Pfam RNA methyltransferase domain 116 273 IPR046886 -
Apr8g2396 285 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 54 274 IPR006700 GO:0006364|GO:0008168
Apr8g2396 285 SUPERFAMILY alpha/beta knot 116 277 IPR029028 -
Apr8g2396 285 SUPERFAMILY PUA domain-like 42 102 IPR015947 -
Apr8g2396 285 Gene3D - 39 284 IPR029026 -
Apr8g2396 285 CDD RsmE-like 118 271 IPR046886 -
Apr8g2396 285 Pfam RNA methyltransferase PUA domain 59 103 IPR046887 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2396 K09761 - gmx:100777253 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2396 8 34236474 34239279 Apr8g2396 8 34236474 34239279 ECH