Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2384 ATGAAAAACCTCCAGACAGCACTTATCTTCCTCATTGGGTTTGTTTCCTCAAGTTTGTTTCAAGTTTCAGTTGCATCTGTTGTTTCAACAGGAGACTTCAACAAGGACTTCTTTGTGATATGGTCTCCTACCCATGTGAACACATCTGCTGATGGACAAACAAGAAGTTTGAAACTGGATCAAGAATCTGGGGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTACCAGGTGATTCTGCAGGCACAGTCCTGGCCTATTATCTTACCTCAGATCAACCGAACCGAGATGAGGTAGACTTTGAGTTTCTGGGCAATGTCTCTGGGGAGCCATATATTCTTCAAACAAATATTTTTGCAGATGGATCTGACAATAGAGAGGAGAGGATTTATCTGTGGTTTGATCCTACAAAGGACTTCCATACTTATTCTGTGTTTTGGAATCTGCAACAGATTGTGTTAATGGTAGATACGATTCCTGTAAGAGTGTATAGAAACCATGCAGAGAAGGGGGTGCCATTTCCTAGATGGCAGCCAATGAGTTTGAAAGCAACATTGTGGAATGGTGATAGCTGGGCAACACGAGGTGGCCAAGATAAGATTGATTGGAAAAAGGGTCCCTTCATAGCTACATTCAGAAATTACAAGATTGATGCTTGTGTGTGGAAAGGAAACCCAAGGTTTTGTAGAGCAGCTAGCCCTGCCAATTGGTGGAACCAATATAGCTTTAACACACTAACATCCACACAAAGAAGGTGGTTCAAATGGGTCAGGAAATACCACATGATTTATGATTACTGTCAGGACAATGAAAGGTTCCAAAACAATCTTCCAAGGGAATGTTCTCTTCCCAAATATTGA 888 0.411 MKNLQTALIFLIGFVSSSLFQVSVASVVSTGDFNKDFFVIWSPTHVNTSADGQTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEVDFEFLGNVSGEPYILQTNIFADGSDNREERIYLWFDPTKDFHTYSVFWNLQQIVLMVDTIPVRVYRNHAEKGVPFPRWQPMSLKATLWNGDSWATRGGQDKIDWKKGPFIATFRNYKIDACVWKGNPRFCRAASPANWWNQYSFNTLTSTQRRWFKWVRKYHMIYDYCQDNERFQNNLPRECSLPKY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2384 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr8g2384 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Apr8g2384 295 Gene3D - 19 294 - -
Apr8g2384 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Apr8g2384 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 8 221 IPR000757 GO:0004553|GO:0005975
Apr8g2384 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 5 293 - -
Apr8g2384 295 Pfam Glycosyl hydrolases family 16 34 213 IPR000757 GO:0004553|GO:0005975
Apr8g2384 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Apr8g2384 295 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr8g2384 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 293 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2384 Apr-Chr8 34147843 34149205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2384 57 295 Glycoside Hydrolase AT2G14620 69.038 1.83e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2384 K08235 - gmx:100793169 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2384 8 34147843 34149205 Apr8g2384 8 34147843 34149205 ECH