Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1329 ATGACGCAATGTTTCTTGTTTCCTGCCAATACTCCTTTCACCGCAAATACAAACTGTCCTCCGCACATCTTTTCTCCGCTGGCCTTGGCTTCACCTGAGAGAAAGAGAGGGATGTTGCAGTGCATCTTTCTTGTGTCGGATTCCGGAGAGGTGATGCTAGAGAAACAGCTCTCTGGGCACCGCGTGGATCGTTCCATATGTACATGGTTCTGGGAACAAGCCATTTCTCAAGGTGACTCCTTCAAGCAACAACCGGTAATTGCTTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGAGGGAATCACTTTTTTGGCGTGCACTCAAGTTGAAATCCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTCCTCGATGATTATTTTGGTGGCTTGAACGAAGACATAATTAAAGACAACTTTGTCATTGTATATGAGCTGCTGGATGAGATGACAGATAACGGCTTCCCCCTAACTACAGAACCAAATATTCTGCAAGAGATTATTGCTCCACCAAATCTTGTCAGCAAAGCCTTGAGTGTTGTGACTGGCAGCAGTTCGAATGTGAGTGATATGCTTCCAGGGGCTATGGCATCTTGTGTTCCCTGGAGAACAGCAGAGCCAAAGTACTCCAACAATGAAGTTTATGTCGACCTTGTTGAAGAAATGGACGCAATTATAAACAGGGATGGGGTTTTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCGTATCTCAGGTCTTCCTGATCTTACTGTTTCATTTGCAAATCCTTCCATCCTAGATGATGTGAGATTTCATCCGTGTGTTCGTTTTCGGCCTTGGGAGTCCCATCAAATTCTTTCATTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGCTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAACCGCAGTTAACTTCAGATGGTGGGACATGCCGTGTTAGTGTATTAGTTGGAATAAAGAATGATCCTGAAAAGACAATTGACTCTGTTACTGTTCAGTTTCAGCTTCCTCCTTACATCTTATCAGCTGATCTGACTTCAAATCATGGAACAGTAAACATCCTTGCTAAAAAGACATGCATCTGGTCCATTGGTCGGATCCCAAAAGATAAAGCCCCTTCTATGTCTGGAACATTTGTGATTGAAACTGGATTGGACCGCCTTCATGTCTTCCCTACATTTCAAGTGGATTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAGACTGGATTTGAAGACTGTACCATACCCATTTTACAAAGGCATTCGAGCTCTTACTAGAGCAGGTGAATTTGAAGTTAGATCATAA 1359 0.429 MTQCFLFPANTPFTANTNCPPHIFSPLALASPERKRGMLQCIFLVSDSGEVMLEKQLSGHRVDRSICTWFWEQAISQGDSFKQQPVIASPTHYIFQVFREGITFLACTQVEIPPLMAIEFLCRVADVLDDYFGGLNEDIIKDNFVIVYELLDEMTDNGFPLTTEPNILQEIIAPPNLVSKALSVVTGSSSNVSDMLPGAMASCVPWRTAEPKYSNNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNSRISGLPDLTVSFANPSILDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRVSVLVGIKNDPEKTIDSVTVQFQLPPYILSADLTSNHGTVNILAKKTCIWSIGRIPKDKAPSMSGTFVIETGLDRLHVFPTFQVDFRIMGVALSGLQIDRLDLKTVPYPFYKGIRALTRAGEFEVRS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1329 452 PIRSF AP_complex_mu 38 452 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr8g1329 452 CDD AP3_Mu_N 40 179 - -
Apr8g1329 452 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 204 451 IPR036168 -
Apr8g1329 452 Pfam Adaptor complexes medium subunit family 204 451 IPR028565 -
Apr8g1329 452 Gene3D Mu homology domain, subdomain B 309 450 - -
Apr8g1329 452 Gene3D Mu homology domain, subdomain B 204 447 - -
Apr8g1329 452 PANTHER AP COMPLEX SUBUNIT MU 45 451 - -
Apr8g1329 452 PRINTS Clathrin coat assembly protein signature 137 164 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr8g1329 452 PRINTS Clathrin coat assembly protein signature 267 294 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr8g1329 452 PRINTS Clathrin coat assembly protein signature 374 385 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr8g1329 452 PANTHER CARMINE, ISOFORM A 45 451 - -
Apr8g1329 452 Gene3D - 38 179 - -
Apr8g1329 452 ProSiteProfiles Mu homology domain (MHD) profile. 215 451 IPR028565 -
Apr8g1329 452 CDD AP-3_Mu3_Cterm 204 451 - -
Apr8g1329 452 SUPERFAMILY SNARE-like 38 179 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1329 Apr-Chr8 19966933 19973530 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1329 K12398 - gmx:100782926 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1329 8 19966933 19973530 Apr8g1329 8 19966933 19973530 ECH
Apr4g0651 4 5378525 5381765 Apr8g1329 8 19966933 19973530 PCT