Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0543 ATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCCTTCAAGATCTTGCTGATCGGTGATTCTGCTGTGGGAAAAAGTAGCCTACTTGTTAGCTTCATCTCCAATTCTGTTGAAGATATTGCCCCCACTATTGGGGTTGATTTTAAGATCAAGCTGCTCACAGTTGGTGAGAAGAGATTGAAACTAACTATTTGGGACACTGCTGGGCAGGAAAGGTTCAGAACACTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTGTTTATGATGTAACAAGAAGAGACACCTTTACAAACTTATCAGAAGTGTGGTCTAAAGAAGTGGAACTCTATTCTACTAATCAGGATTGCGTGAAGGTGCTAGTAGGAAATAAAGTTGATAGAGATTCTGAAAGGGTTGTCAGCAAAGAAGAGGGTTTAGCGCTTGCCAATGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCTAGAAAATGTGGAGATGTGCTTCAAGGAACTCGCACTAAAGATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGTAAAAAGGAGTATTTCAAAGCAAAAACAGGAACCACAACCATCCGAATTTGGTGGTTGTTGTTCCTAA 636 0.4041 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNSVEDIAPTIGVDFKIKLLTVGEKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQDCVKVLVGNKVDRDSERVVSKEEGLALANELGCLFFECSAKTLENVEMCFKELALKIMEVPSLLEEGSTAVKRSISKQKQEPQPSEFGGCCS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0543 211 Gene3D - 8 210 IPR027417 -
Apr8g0543 211 CDD Rab18 15 176 - -
Apr8g0543 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Apr8g0543 211 PANTHER DRAB5-RELATED 1 211 - -
Apr8g0543 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Apr8g0543 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
Apr8g0543 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 188 IPR027417 -
Apr8g0543 211 SMART rab_sub_5 15 179 - -
Apr8g0543 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Apr8g0543 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Apr8g0543 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Apr8g0543 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Apr8g0543 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Apr8g0543 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Apr8g0543 211 SMART ras_sub_4 12 179 - -
Apr8g0543 211 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Apr8g0543 211 SMART ran_sub_2 20 206 - -
Apr8g0543 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Apr8g0543 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0543 Apr-Chr8 4795358 4798900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0543 9 191 EF-hand Containing Proteins AT5G27540 26.702 8.65e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0543 K07910 - gmx:100818801 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0543 8 4795358 4798900 Apr8g0543 8 4795358 4798900 ECH
Apr4g0237 4 1999542 2002835 Apr8g0543 8 4795358 4798900 PCT