Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0530 ATGGCTCTAATATATCTCTCTGCTATTTTATTCTTTTTGGCCTCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGTTACTGGCCAAGTTCCAAATTCAGGTCTATGAGCTTTTACAAAGGGTTTAAAAATCTCTGGGGCCCTCAGCACCAAAGCTTAGACCAAAATGCATTAACAATTTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTTCGTCCATTTAGATCCGGGTACTTTGGTGCTTCCATTAAGCTTCACCCTGGCTATACTGCAGGAGTTATAACAGCTTTTTATCTTTCTAACAATGAAGCACATCCGGGCTTCCATGATGAAGTGGATATTGAGTTTCTTGGGACAACATTTGGAAAGCCTTATACTTTACAAACCAATGTTTATATAAGAGGAAGTGGGGATGGCAAAATTATTGGCAGAGAGATGAAGTTCCATCTTTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAGATCATATTCCTTGTGGATGATGTGCCTATAAGGAGGTACCCAAGGAAGAGTGGTGCAACATTTCCACTACGGCCGATGTGGCTTTATGGTTCTATATGGGATGCCTCGTCATGGGCAACAGAAGATGGAAAGTACAAAGCTGATTACAAATACCAACCTTTTGTTGCAAGGTACACCAACTTCAAAGCTAGTGGTTGTTCAGCCTATGCCTCTCGTTGGTGTCATCCAGTCTCAGCCTCGCCATATAGGTCTGGTGGGTTGACCAAGCAACAGCATTGGGCCATGAGATGGGTGCAAAGACACCACATGGTTTATAACTATTGCCAAGACCCCAAAAGAGACCACACACTAACACCTGAGTGTTGGGCTTAA 885 0.4316 MALIYLSAILFFLASSSNAYWPPSPGYWPSSKFRSMSFYKGFKNLWGPQHQSLDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSGATFPLRPMWLYGSIWDASSWATEDGKYKADYKYQPFVARYTNFKASGCSAYASRWCHPVSASPYRSGGLTKQQHWAMRWVQRHHMVYNYCQDPKRDHTLTPECWA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0530 294 Gene3D - 18 292 - -
Apr8g0530 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 293 - -
Apr8g0530 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 229 IPR000757 GO:0004553|GO:0005975
Apr8g0530 294 PIRSF EndGlu_transf 3 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr8g0530 294 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
Apr8g0530 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 280 IPR013320 -
Apr8g0530 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 292 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Apr8g0530 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 293 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0530 Apr-Chr8 4672787 4674568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0530 1 292 Glycoside Hydrolase AT3G44990 65.068 1.33e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0530 K08235 - gmx:100796698 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0530 8 4672787 4674568 Apr8g0530 8 4672787 4674568 ECH
Apr4g0222 4 1891825 1893731 Apr8g0530 8 4672787 4674568 PCT