Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0403 ATGGTGGGTATCTTCTCTTTGGTCACAGGGAGGCCCGGACCAAGTGGGTTTGGATCCTCCTCAACTGCTGAACAAGTCACTCAAGGAATTGATGCTAGCAATCTCACCGCAATTATCACAGGAGGAGCAAGTGGAATTGGGTTGGAAACAGCACGAGTTCTGGCTCTTCGAAAGGCCCATGTCATAATTGCTGCTAGAAACATGGAATCTGCAAAGGAAGCAAAACAACTCATACTACTAGAAAATGAGTCAGCTCGAGTGGACATAATGAAGCTCGACCTTTGCTCAGTGAAATCTGTCAGATCCTTTGTTGACAACTTCCTCGCTCTTGATCTTCCTCTCAACATCTTAATAAACAACGCTGGAGTGATGTTCTGCCCTTTTCAGCTGACAGAAGATGGAATCGAAATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTCTTAACAAACCTTCTTCTTGACAAGATGAAACAAACTGCAAAAACCACTGGAATTGAGGGCAGGATTATAAATCTGTCATCAATTGCTCACCTCTACACTTACGAAGAGGGGATTCGATTTGATGACATCAATGATGAATTTGGTTACTCTGACAAGAGGGCTTACGGGCAGTCCAAATTAGCCAACATATTACATGCAAATGAGCTTTCTCGTCGCTTACAGGAAGAGGGTGTTAACATCACAGCCAACTCTGTCCACCCAGGGGTGATAATGACTCCTCTTATGAGACACTCTGCTTTACTTATGAGTACGTCAATTATTTTCTCCTTCTTCATATGGAAGAACGTCCCACAGGGTGCAGCCACAACATGCTATGTTGCTCTACACCCAAGCTTGAAAGGTGTAACCGGGAAGTATTTTCTGGATTGTAACGAGTTTCCACCAAGTGCCCCTGCATCAAACGAACTTTTGGGAAGGAAACTCTGGGATTTTAGCAACAAGTTGATCAAATCAATTTCAAAAGCCTGA 972 0.4352 MVGIFSLVTGRPGPSGFGSSSTAEQVTQGIDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQLILLENESARVDIMKLDLCSVKSVRSFVDNFLALDLPLNILINNAGVMFCPFQLTEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHLYTYEEGIRFDDINDEFGYSDKRAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRHSALLMSTSIIFSFFIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFPPSAPASNELLGRKLWDFSNKLIKSISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0403 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Apr8g0403 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Apr8g0403 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Apr8g0403 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Apr8g0403 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Apr8g0403 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Apr8g0403 323 Gene3D - 25 320 - -
Apr8g0403 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Apr8g0403 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Apr8g0403 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Apr8g0403 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Apr8g0403 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Apr8g0403 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0403 Apr-Chr8 3433411 3438355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0403 35 244 Miscellaneous Gene Families AT2G29340 28.169 1.93e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0403 K11153 - gmx:100795299 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0403 8 3433411 3438355 Apr8g0403 8 3433411 3438355 ECH
Apr4g0114 4 1011498 1013867 Apr8g0403 8 3433411 3438355 PCT