Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0170 ATGCGGAGAGTGGCGTATTCATTCCCAGAGGAGGTTCTGGAGCACGTGTTTTCGTTCATTGAGTGTGACAAGGACCGTGGTTCGATCTCGCTGGTGTGCAAATCGTGGTACGAGATCGAGAGATGGTGCAGGAAGAGGGTGTTTGTGGGGAACTGCTACGCTGTGAGTCCTTCAACGGTGATAAAACGGTTCCCTAAGTTGAGATCCATCACCATCAAGGGGAAGCCTCACTTCGCTGACTTCAATTTGGTACCCGAGGGTTGGGGCGCTTATGTGCGCCCTTGGATCATGGCCATGGCTGATGCTTATCCCTGCCTTCAGGAGATTAGGCTCAAGAGGATGGTCGTAACCGACGACTGTTTGGAGATTATTGCTAAATCGTTTAAGAATTTCAGCGTGTTGGTTCTCTCCTCTTGCGAGGGTTTCACTACTGATGGACTTGCTACCATTGCCGCCAATTGCAGGAATTTGAGGGAATTGGACTTGAGGGAGAGTGAAGTGGATGACATTTGTGGACACTGGCTAAGCCATTTTCCTGAGTCGTATACATCGTTGGTTTCCCTCAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCTCTAGAACGCCTGGTTAGTAGGTGTCCCAACCTGCAGACGCTTTGCCTCAACCGTGCTGTGCCCCTTGATAGGCTAGCCAACCTTCTTCGTGGAGCTCCTCAGCTGGTTGAGTTAGGCACTGGAACCTACACGACTGAGATGCGACCTGAGGTATTCTCGAACCTGGCGGCAGCATTTTCTGGGTGCCAGCAATTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCGTCTTACCTTCCAGCTGTCTACCCTATCTGCTCCCGGCTGACATCACTAAACTTGAGTTATGCTACGATTCAGAGCCCCGATCTTATCAAGCTTGTTAGTCAATGTGAGAGTTTGCAGCGGTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGAAGTGGTTGCTGCATCTTGCAAGGATTTGAGGGAGTTGAGGGTGTTTCCATCTGACGCATTTGGATTAGAACCAAATGTGGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGCCCCAAGCTCCAGTCAGTTCTATACTTTTGTCGTCAAATGTCTAATGCTGCCTTAAATACAATTGCCCGAAACAGGCCTAATATGACTCGTTTTAGACTATGTATTATTGAGCCTCGGACTCCTGACTATCTTACCGGTCAATCTCTGGATACTGGTTTCGGGGCCATTGTAGAGCATTGCAAGGATCTTCGGCGCCTTTCCCTTTCTGGGCTTCTTACTGATCGTGTTTTTGAGTATATTGGGACTTACGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGAGAGTGATTTGGGACTCCATCATGTGCTGTCCGGGTGTGACAATCTTAGGAAGCTGGAGATAAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTGGCAAATGCTGTTAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCATGGTGAGTTTTGGAGCATGTAAGCTGCTGGGTAAGAAAATGCTACAACTTAATGTTGAAGTCATTGAGGAAAGAGGACCTCCAGATTCAAGGCCAGAGAGTAGTCCTGTCGAGAAGCTTTATGTTTACAGGACCATTTCGGGGCCCAGATTGGACATGCCTGGCTATGTGTGGAGAATGGAAGATGATTCTGCTTTAAGAATTTCTTGA 1755 0.4849 MRRVAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRKRVFVGNCYAVSPSTVIKRFPKLRSITIKGKPHFADFNLVPEGWGAYVRPWIMAMADAYPCLQEIRLKRMVVTDDCLEIIAKSFKNFSVLVLSSCEGFTTDGLATIAANCRNLRELDLRESEVDDICGHWLSHFPESYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLCLNRAVPLDRLANLLRGAPQLVELGTGTYTTEMRPEVFSNLAAAFSGCQQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYATIQSPDLIKLVSQCESLQRLWVLDYIEDAGLEVVAASCKDLRELRVFPSDAFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALNTIARNRPNMTRFRLCIIEPRTPDYLTGQSLDTGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAVKLETMRSLWMSSCMVSFGACKLLGKKMLQLNVEVIEERGPPDSRPESSPVEKLYVYRTISGPRLDMPGYVWRMEDDSALRIS* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0170 584 Pfam F-box 6 46 IPR041567 -
Apr8g0170 584 Gene3D - 1 44 - -
Apr8g0170 584 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 575 - -
Apr8g0170 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 575 - -
Apr8g0170 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Apr8g0170 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Apr8g0170 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Apr8g0170 584 SUPERFAMILY RNI-like 36 533 - -
Apr8g0170 584 SUPERFAMILY F-box domain 7 42 IPR036047 GO:0005515
Apr8g0170 584 SMART LRR_CC_2 479 503 IPR006553 -
Apr8g0170 584 SMART LRR_CC_2 154 191 IPR006553 -
Apr8g0170 584 SMART LRR_CC_2 370 394 IPR006553 -
Apr8g0170 584 SMART LRR_CC_2 128 153 IPR006553 -
Apr8g0170 584 SMART LRR_CC_2 430 453 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0170 Apr-Chr8 1354542 1357886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0170 K14485 - gmx:100809794 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0170 8 1354542 1357886 Apr8g0170 8 1354542 1357886 ECH
Apr4g0448 4 3801946 3805745 Apr8g0170 8 1354542 1357886 PCT